| biocViews |
DataRepresentation,基础设施,软件 |
| 版本 |
0.16.0 |
| Bioconductor自 |
BioC 3.0 (r - 3.1)(3.5年) |
| 许可证 |
艺术- 2.0 |
| 取决于 |
R(> = 3.3.0)、方法、效用,统计,stats4,BiocGenerics(> = 0.23.3) |
| 进口 |
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| 链接 |
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| 建议 |
IRanges,GenomicRanges,矩阵,ShortRead,图,data.table,RUnit |
| SystemRequirements |
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| 增强了 |
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| URL |
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| 取决于我 |
altcdfenvs,AnnotationHubData,ATACseqQC,Biostrings,BiSeq,BSgenome,bumphunter,CellMapper,CexoR,chimeraviz,ChIPComp,ChIPpeakAnno,chipseq,ChIPseqR,食典委,coseq,CSAR,DelayedArray,DESeq2,DEXSeq,DirichletMultinomial,DMCHMM,DMRcaller,epigenomix,ExperimentHubData,ExpressionAtlas,fCCAC,GA4GHclient,GenomeInfoDb,GenomicAlignments,GenomicFeatures,GenomicRanges,GenomicScores,GenomicTuples,girafe,groHMM,Gviz,HelloRanges,htSeqTools,InPAS,感兴趣,IRanges,meshr,MotifDb,NADfinder,OTUbase,pd.ag,pd.aragene.1.0.st,pd.aragene.1.1.st,pd.ath1.121501,pd.barley1,pd.bovgene.1.0.st,pd.bovgene.1.1.st,pd.bovine,pd.bsubtilis,pd.cangene.1.0.st,pd.cangene.1.1.st,pd.canine,pd.canine.2,pd.celegans,pd.chicken,pd.chigene.1.0.st,pd.chigene.1.1.st,pd.chogene.2.0.st,pd.chogene.2.1.st,pd.citrus,pd.clariom.d.human,pd.clariom.s.human,pd.clariom.s.human.ht,pd.clariom.s.mouse,pd.clariom.s.mouse.ht,pd.clariom.s.rat,pd.clariom.s.rat.ht,pd.cotton,pd.cyngene.1.0.st,pd.cyngene.1.1.st,pd.cyrgene.1.0.st,pd.cyrgene.1.1.st,pd.cytogenetics.array,pd.drogene.1.0.st,pd.drogene.1.1.st,pd.drosgenome1,pd.drosophila.2,pd.e.coli.2,pd.ecoli,pd.ecoli.asv2,pd.elegene.1.0.st,pd.elegene.1.1.st,pd.equgene.1.0.st,pd.equgene.1.1.st,pd.felgene.1.0.st,pd.felgene.1.1.st,pd.fingene.1.0.st,pd.fingene.1.1.st,pd.genomewidesnp.5,pd.genomewidesnp.6,pd.guigene.1.0.st,pd.guigene.1.1.st,pd.hc.g110,pd.hg.focus,pd.hg.u133.plus.2,pd.hg.u133a,pd.hg.u133a.2,pd.hg.u133a.tag,pd.hg.u133b,pd.hg.u219,pd.hg.u95a,pd.hg.u95av2,pd.hg.u95b,pd.hg.u95c,pd.hg.u95d,pd.hg.u95e,pd.hg18.60mer.expr,pd.ht.hg.u133.plus.pm,pd.ht.hg.u133a,pd.ht.mg.430a,pd.hta.2.0,pd.hu6800,pd.huex.1.0.st.v2,pd.hugene.1.0.st.v1,pd.hugene.1.1.st.v1,pd.hugene.2.0.st,pd.hugene.2.1.st,pd.maize,pd.mapping250k.nsp,pd.mapping250k.sty,pd.mapping50k.hind240,pd.mapping50k.xba240,pd.margene.1.0.st,pd.margene.1.1.st,pd.medgene.1.0.st,pd.medgene.1.1.st,pd.medicago,pd.mg.u74a,pd.mg.u74av2,pd.mg.u74b,pd.mg.u74bv2,pd.mg.u74c,pd.mg.u74cv2,pd.mirna.1.0,pd.mirna.2.0,pd.mirna.3.0,pd.mirna.4.0,pd.moe430a,pd.moe430b,pd.moex.1.0.st.v1,pd.mogene.1.0.st.v1,pd.mogene.1.1.st.v1,pd.mogene.2.0.st,pd.mogene.2.1.st,pd.mouse430.2,pd.mouse430a.2,pd.mta.1.0,pd.mu11ksuba,pd.mu11ksubb,pd.nugo.hs1a520180,pd.nugo.mm1a520177,pd.ovigene.1.0.st,pd.ovigene.1.1.st,pd.pae.g1a,pd.plasmodium.anopheles,pd.poplar,pd.porcine,pd.porgene.1.0.st,pd.porgene.1.1.st,pd.rabgene.1.0.st,pd.rabgene.1.1.st,pd.rae230a,pd.rae230b,pd.raex.1.0.st.v1,pd.ragene.1.0.st.v1,pd.ragene.1.1.st.v1,pd.ragene.2.0.st,pd.ragene.2.1.st,pd.rat230.2,pd.rcngene.1.0.st,pd.rcngene.1.1.st,pd.rg.u34a,pd.rg.u34b,pd.rg.u34c,pd.rhegene.1.0.st,pd.rhegene.1.1.st,pd.rhesus,pd.rice,pd.rjpgene.1.0.st,pd.rjpgene.1.1.st,pd.rn.u34,pd.rta.1.0,pd.rusgene.1.0.st,pd.rusgene.1.1.st,pd.s.aureus,pd.soybean,pd.soygene.1.0.st,pd.soygene.1.1.st,pd.sugar.cane,pd.tomato,pd.u133.x3p,pd.vitis.vinifera,pd.wheat,pd.x.laevis.2,pd.x.tropicalis,pd.xenopus.laevis,pd.yeast.2,pd.yg.s98,pd.zebgene.1.0.st,pd.zebgene.1.1.st,pd.zebrafish,plethy,RIPSeeker,RnBeads,segmentSeq,SNPlocs.Hsapiens.dbSNP141.GRCh38,topdownr,三层,VariantTools,火神,XtraSNPlocs.Hsapiens.dbSNP141.GRCh38,XVector |
| 进口我 |
affycoretools,ALDEx2,AllelicImbalance,高山,amplican,anamiR,AneuFinder,AnnotationDbi,AnnotationForge,AnnotationHub,annotatr,ArrayTV,ASpli,BadRegionFinder,舞会礼服,基础知识,BasicSTARRseq,biovizBase,BiSeq,BitSeq,bnbc,BPRMeth,分歧点,BSgenome,bsseq,卡斯珀,cgdv17,ChIPanalyser,chipenrich,chipenrich.data,ChIPexoQual,ChIPQC,ChIPseeker,chromstaR,chromswitch,chromVAR,CINdex,切肉刀,cn.mops,cn,CNPBayes,CNVPanelizer,彗星,compEpiTools,consensusSeekeR,contiBAIT,copynumber,文案,CoverageView,CRISPRseek,CrispRVariants,csaw,腰带,curatedMetagenomicData,curatedTCGAData,customProDB,cydar,DChIPRep,debrowser,解读,DEGreport,DelayedMatrixStats,derfinder,derfinderHelper,derfinderPlot,DiffBind,diffHic,diffloop,DMRcate,剂量,DRIMSeq,easyRNASeq,eegc,埃尔默,EnrichmentBrowser,ensembldb,ensemblVEP,epivizr,epivizrData,epivizrStandalone,erma,esATAC,EventPointer,ExperimentHub,facopy,fastseg,FindMyFriends,fitCons.UCSC.hg19,FunciSNP,GA4GHshiny,gcapc,genbankr,genefilter,GeneRegionScan,《创世纪》,GenoGAM,genomation,genomeIntervals,GenomicAlignments,GenomicFiles,GenomicInteractions,genoset,GGBase,ggbio,GGtools,Glimma,gmapR,GoogleGenomics,还装有,哥特,gQTLBase,gQTLstats,GRmetrics,GUIDEseq,gwascat,h5vc,HDF5Array,HiCcompare,HTSeqGenie,理想的,ima,ImpulseDE2,检查,InteractionSet,InterMineR,isomiRs,iva,ivygapSE,IWTomics,JunctionSeq,karyoploteR,烤肉串,萝拉,M3D,MADSEQ,MafDb.1Kgenomes.phase1.hs37d5,MafDb.1Kgenomes.phase3.hs37d5,MafDb.ESP6500SI.V2.SSA137.GRCh38,MafDb.ESP6500SI.V2.SSA137.hs37d5,MafDb.ExAC.r1.0.hs37d5,MafDb.ExAC.r1.0.nonTCGA.hs37d5,MafDb.gnomAD.r2.0.1.hs37d5,MafDb.gnomADex.r2.0.1.hs37d5,MafDb.TOPMed.freeze5.hg38,桅杆,餐,methInheritSim,methylInheritance,methylKit,methylPipe,methylumi,mimager,minfi,MinimumDistance,米拉,海市蜃楼,MMDiff2,马赛克,motifbreakR,motifmatchr,MotIV,mpra,msa,msgbsR,MSnbase,MultiAssayExperiment,MultiDataSet,MutationalPatterns,mygene,myvariant,NarrowPeaks,nucleoSim,诊断,oligoClasses,ontoProc,openPrimeR,Organism.dplyr,OrganismDbi,panelcn.mops,PathwaySplice,Pbase,pcaExplorer,pd.atdschip.tiling,pdInfoBuilder,PGA,phastCons100way.UCSC.hg19,phastCons100way.UCSC.hg38,phastCons7way.UCSC.hg38,图片,平,聚酯,pqsfinder,prebs,procoil,PureCN,qcmetrics,qpgraph,QuasR,R3CPET,R453Plus1Toolbox,RaggedExperiment,RareVariantVis,Rariant,Rcade,美国广播公司,重新计票,地区,regionReport,regsplice,REMP,Repitools,restfulSE,rexposome,rhdf5client,RiboProfiling,RJMCMCNucleosomes,RMassBank,RNAprobR,咆哮,Rqc,Rsamtools,RTCGAToolbox,研制,rtracklayer,SC3,嘘,scDD,scmap,SCnorm,scPipe,食物,SeqArray,seqCAT,seqplots,SeqSQC,SeqVarTools,sevenbridges,SGSeq,ShortRead,simulatorZ,SingleCellExperiment,击杀,SNPchip,SNPhood,SNPlocs.Hsapiens.dbSNP.20101109,SNPlocs.Hsapiens.dbSNP141.GRCh38,SNPlocs.Hsapiens.dbSNP144.GRCh37,SNPlocs.Hsapiens.dbSNP144.GRCh38,SNPlocs.Hsapiens.dbSNP149.GRCh38,SNPlocs.Hsapiens.dbSNP150.GRCh38,soGGi,SomaticCancerAlterations,SomaticSignatures,SplicingGraphs,分裂,斯坦,SummarizedExperiment,TarSeqQC,TCGAbiolinks,TFBSTools,TFHAZ,三硝基甲苯,trackViewer,transcriptR,TransView,TSRchitect,TSSi,TVTB,twoddpcr,VanillaICE,VariantAnnotation,VariantFiltering,wavClusteR,wiggleplotr,xcms,XtraSNPlocs.Hsapiens.dbSNP141.GRCh38,XtraSNPlocs.Hsapiens.dbSNP144.GRCh37,XtraSNPlocs.Hsapiens.dbSNP144.GRCh38,XVector,山药 |
| 建议我 |
alternativeSplicingEvents.hg19,BiocGenerics,epivizrChart,GWASTools,RTCGA,飞溅 |
| 构建报告 |
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