| biocViews |
DataRepresentation,基础设施,软件 |
| 版本 |
2.12.0 |
| Bioconductor自 |
BioC 2.3 (r - 2.8)(9.5年) |
| 许可证 |
艺术- 2.0 |
| 取决于 |
R(> = 3.1.0)、方法、效用,统计数据,BiocGenerics(> = 0.23.3),S4Vectors(> = 0.15.5) |
| 进口 |
stats4 |
| 链接 |
S4Vectors |
| 建议 |
XVector,GenomicRanges,Rsamtools,GenomicAlignments,GenomicFeatures,BSgenome.Celegans.UCSC.ce2,pasillaBamSubset,RUnit |
| SystemRequirements |
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| 增强了 |
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| URL |
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| 取决于我 |
AnnotationDbi,AnnotationHubData,BaalChIP,BayesPeak,biomvRCNS,Biostrings,BiSeq,BSgenome,BubbleTree,bumphunter,咖啡馆,卡斯珀,CexoR,chimeraviz,ChIPComp,ChIPpeakAnno,chipseq,CNPBayes,食典委,consensusSeekeR,CSAR,customProDB,deepSNV,DelayedArray,DESeq2,DEXSeq,DirichletMultinomial,DMCHMM,DMRcaller,epigenomix,exomeCopy,fCCAC,FunciSNP.data,geneRxCluster,GenomeInfoDb,GenomicAlignments,GenomicFeatures,GenomicRanges,Genominator,groHMM,gtrellis,吉他,Gviz,harbChIP,HelloRanges,HilbertCurve,HiTC,HMMcopy,htSeqTools,IdeoViz,LiebermanAidenHiC2009,methyAnalysis,MotifDb,motifRG,NADfinder,oneChannelGUI,OTUbase,pd.ag,pd.aragene.1.0.st,pd.aragene.1.1.st,pd.ath1.121501,pd.barley1,pd.bovgene.1.0.st,pd.bovgene.1.1.st,pd.bovine,pd.bsubtilis,pd.cangene.1.0.st,pd.cangene.1.1.st,pd.canine,pd.canine.2,pd.celegans,pd.chicken,pd.chigene.1.0.st,pd.chigene.1.1.st,pd.chogene.2.0.st,pd.chogene.2.1.st,pd.citrus,pd.clariom.d.human,pd.clariom.s.human,pd.clariom.s.human.ht,pd.clariom.s.mouse,pd.clariom.s.mouse.ht,pd.clariom.s.rat,pd.clariom.s.rat.ht,pd.cotton,pd.cyngene.1.0.st,pd.cyngene.1.1.st,pd.cyrgene.1.0.st,pd.cyrgene.1.1.st,pd.cytogenetics.array,pd.drogene.1.0.st,pd.drogene.1.1.st,pd.drosgenome1,pd.drosophila.2,pd.e.coli.2,pd.ecoli,pd.ecoli.asv2,pd.elegene.1.0.st,pd.elegene.1.1.st,pd.equgene.1.0.st,pd.equgene.1.1.st,pd.felgene.1.0.st,pd.felgene.1.1.st,pd.fingene.1.0.st,pd.fingene.1.1.st,pd.genomewidesnp.5,pd.genomewidesnp.6,pd.guigene.1.0.st,pd.guigene.1.1.st,pd.hc.g110,pd.hg.focus,pd.hg.u133.plus.2,pd.hg.u133a,pd.hg.u133a.2,pd.hg.u133a.tag,pd.hg.u133b,pd.hg.u219,pd.hg.u95a,pd.hg.u95av2,pd.hg.u95b,pd.hg.u95c,pd.hg.u95d,pd.hg.u95e,pd.hg18.60mer.expr,pd.ht.hg.u133.plus.pm,pd.ht.hg.u133a,pd.ht.mg.430a,pd.hta.2.0,pd.hu6800,pd.huex.1.0.st.v2,pd.hugene.1.0.st.v1,pd.hugene.1.1.st.v1,pd.hugene.2.0.st,pd.hugene.2.1.st,pd.maize,pd.mapping250k.nsp,pd.mapping250k.sty,pd.mapping50k.hind240,pd.mapping50k.xba240,pd.margene.1.0.st,pd.margene.1.1.st,pd.medgene.1.0.st,pd.medgene.1.1.st,pd.medicago,pd.mg.u74a,pd.mg.u74av2,pd.mg.u74b,pd.mg.u74bv2,pd.mg.u74c,pd.mg.u74cv2,pd.mirna.1.0,pd.mirna.2.0,pd.mirna.3.0,pd.mirna.4.0,pd.moe430a,pd.moe430b,pd.moex.1.0.st.v1,pd.mogene.1.0.st.v1,pd.mogene.1.1.st.v1,pd.mogene.2.0.st,pd.mogene.2.1.st,pd.mouse430.2,pd.mouse430a.2,pd.mta.1.0,pd.mu11ksuba,pd.mu11ksubb,pd.nugo.hs1a520180,pd.nugo.mm1a520177,pd.ovigene.1.0.st,pd.ovigene.1.1.st,pd.pae.g1a,pd.plasmodium.anopheles,pd.poplar,pd.porcine,pd.porgene.1.0.st,pd.porgene.1.1.st,pd.rabgene.1.0.st,pd.rabgene.1.1.st,pd.rae230a,pd.rae230b,pd.raex.1.0.st.v1,pd.ragene.1.0.st.v1,pd.ragene.1.1.st.v1,pd.ragene.2.0.st,pd.ragene.2.1.st,pd.rat230.2,pd.rcngene.1.0.st,pd.rcngene.1.1.st,pd.rg.u34a,pd.rg.u34b,pd.rg.u34c,pd.rhegene.1.0.st,pd.rhegene.1.1.st,pd.rhesus,pd.rice,pd.rjpgene.1.0.st,pd.rjpgene.1.1.st,pd.rn.u34,pd.rta.1.0,pd.rusgene.1.0.st,pd.rusgene.1.1.st,pd.s.aureus,pd.soybean,pd.soygene.1.0.st,pd.soygene.1.1.st,pd.sugar.cane,pd.tomato,pd.u133.x3p,pd.vitis.vinifera,pd.wheat,pd.x.laevis.2,pd.x.tropicalis,pd.xenopus.laevis,pd.yeast.2,pd.yg.s98,pd.zebgene.1.0.st,pd.zebgene.1.1.st,pd.zebrafish,pepStat,PGA,平,proBAMr,PSICQUIC,RefNet,rfPred,rGADEM,rGREAT,RIPSeeker,RJMCMCNucleosomes,rMAT,Scale4C,scsR,SGSeq,SICtools,SNPlocs.Hsapiens.dbSNP.20101109,SNPlocs.Hsapiens.dbSNP.20120608,SNPlocs.Hsapiens.dbSNP141.GRCh38,SNPlocs.Hsapiens.dbSNP142.GRCh37,TEQC,tra利用,triform,三层,VariantTools,XtraSNPlocs.Hsapiens.dbSNP141.GRCh38,XVector |
| 进口我 |
ALDEx2,AllelicImbalance,高山,amplican,AneuFinder,annmap,AnnotationDbi,annotatr,ArrayExpressHTS,ASpli,ATACseqQC,舞会礼服,bamsignals,BasicSTARRseq,BayesPeak,BBCAnalyzer,beadarray,biovizBase,BiSeq,BitSeq,bnbc,BPRMeth,分歧点,BSgenome,bsseq,BUMHMM,篮球选手,cgdv17,魅力,ChIPanalyser,chipenrich,chipenrich.data,ChIPexoQual,ChIPQC,ChIPseeker,chipseq,ChIPseqR,ChIPsim,ChromHeatMap,chromstaR,chromswitch,chromVAR,CINdex,切肉刀,cn.mops,cn,CNVPanelizer,CNVrd2,cobindR,彗星,compEpiTools,contiBAIT,conumee,copynumber,文案,CoverageView,CRISPRseek,CrispRVariants,csaw,customProDB,debrowser,解读,DelayedMatrixStats,derfinder,derfinderHelper,derfinderPlot,DiffBind,diffHic,diffloop,DMRcate,DMRScan,DOQTL,DRIMSeq,easyRNASeq,EDASeq,埃尔默,EnrichedHeatmap,ensembldb,epivizr,epivizrData,esATAC,facopy,fastseg,FindMyFriends,fitCons.UCSC.hg19,啪嗒啪嗒地响,flowQ,FunciSNP,GA4GHclient,gcapc,genbankr,geneAttribution,GeneGeneInteR,《创世纪》,GenoGAM,genomation,genomeIntervals,GenomicAlignments,GenomicDataCommons,GenomicFiles,GenomicInteractions,GenomicScores,GenomicTuples,genoset,genotypeeval,GenVisR,GGBase,ggbio,GGtools,girafe,gmapR,GoogleGenomics,还装有,哥特,gQTLstats,GUIDEseq,gwascat,h5vc,HDF5Array,的热图,HiCcompare,HTSeqGenie,理想的,ima,InPAS,检查,intansv,InteractionSet,感兴趣,InterMineR,IsoformSwitchAnalyzeR,isomiRs,iva,IWTomics,JunctionSeq,karyoploteR,萝拉,M3D,MADSEQ,MafDb.1Kgenomes.phase1.hs37d5,MafDb.1Kgenomes.phase3.hs37d5,MafDb.ESP6500SI.V2.SSA137.GRCh38,MafDb.ESP6500SI.V2.SSA137.hs37d5,MafDb.ExAC.r1.0.hs37d5,MafDb.ExAC.r1.0.nonTCGA.hs37d5,MafDb.gnomAD.r2.0.1.hs37d5,MafDb.gnomADex.r2.0.1.hs37d5,MafDb.TOPMed.freeze5.hg38,MatrixRider,餐,MEDIPS,metagene,methimpute,methInheritSim,methVisual,methyAnalysis,methylInheritance,methylKit,methylPipe,MethylSeekR,methylumi,methyvim,minfi,MinimumDistance,米拉,马赛克,motifbreakR,motifmatchr,motifRG,MotIV,msa,msgbsR,MSnbase,MultiAssayExperiment,MultiDataSet,MutationalPatterns,NarrowPeaks,normr,nucleoSim,诊断,oligoClasses,openPrimeR,Organism.dplyr,OrganismDbi,panelcn.mops,Pbase,pcaExplorer,pd.081229.hg18.promoter.medip.hx1,pd.2006.07.18.hg18.refseq.promoter,pd.2006.07.18.mm8.refseq.promoter,pd.2006.10.31.rn34.refseq.promoter,pd.atdschip.tiling,pd.charm.hg18.example,pd.feinberg.hg18.me.hx1,pd.feinberg.mm8.me.hx1,pd.mirna.3.1,pdInfoBuilder,phastCons100way.UCSC.hg19,phastCons100way.UCSC.hg38,phastCons7way.UCSC.hg38,图片,平,plethy,podkat,聚酯,pqsfinder,prebs,PureCN,Pviz,QDNAseq,qpgraph,qsea,QuasR,R3CPET,r3Cseq,R453Plus1Toolbox,RaggedExperiment,RareVariantVis,Rariant,Rcade,rCGH,重新计票,REDseq,地区,REMP,Repitools,ReportingTools,rGADEM,RiboProfiling,riboSeqR,rMAT,RNAprobR,rnaSeqMap,RnBeads,咆哮,Rqc,Rsamtools,rSFFreader,RSVSim,RTCGAToolbox,研制,rtracklayer,SCAN.UPC,segmentSeq,SeqArray,seqCAT,seqPattern,seqplots,SeqSQC,SeqVarTools,ShortRead,simulatorZ,skewr,击杀,SNPchip,SNPhood,SNPlocs.Hsapiens.dbSNP.20101109,SNPlocs.Hsapiens.dbSNP.20120608,SNPlocs.Hsapiens.dbSNP141.GRCh38,SNPlocs.Hsapiens.dbSNP142.GRCh37,SNPlocs.Hsapiens.dbSNP144.GRCh37,SNPlocs.Hsapiens.dbSNP144.GRCh38,SNPlocs.Hsapiens.dbSNP149.GRCh38,SNPlocs.Hsapiens.dbSNP150.GRCh38,soGGi,SomaticCancerAlterations,SomaticSignatures,连接工具,spliceSites,SplicingGraphs,分裂,斯坦,SummarizedExperiment,SVM2CRM,TarSeqQC,TCGAbiolinks,TCseq,TFBSTools,TFHAZ,TitanCNA,三硝基甲苯,tracktables,trackViewer,transcriptR,TransView,triform,TSRchitect,TSSi,TVTB,VanillaICE,VariantAnnotation,VariantFiltering,wavClusteR,waveTiling,wiggleplotr,XtraSNPlocs.Hsapiens.dbSNP141.GRCh38,XtraSNPlocs.Hsapiens.dbSNP144.GRCh37,XtraSNPlocs.Hsapiens.dbSNP144.GRCh38,XVector,山药 |
| 建议我 |
注释,AnnotationHub,BaseSpaceR,BiocGenerics,芝加哥,ClassifyR,epivizrChart,gQTLBase,GWASTools,HilbertVis,HilbertVisGUI,海市蜃楼,regionReport,RTCGA,S4Vectors,yeastRNASeq |
| 构建报告 |
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