# # # R代码从装饰图案的tigre_quick来源。Rnw“# # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # #代码块1号:风格# # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # BiocStyle::乳胶()# # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # #代码块2号:tigre_quick。Rnw: 44-45 # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # #选项(宽度= 60)# # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # #代码块3号:tigre_quick。Rnw: 64 - 66 (eval = FALSE) # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # #源(“//www.anjoumacpherson.com/biocLite.R”) # # biocLite (“tigre”) # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # #代码块数量4:tigre_quick。Rnw: 75 - 76 # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # #库(tigre) # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # #代码块5号:tigre_quick。Rnw: 92 - 105 (eval = FALSE) # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # #的玻璃纸文件的名字expfiles < - c(粘贴(“embryo_tc_4_ 1:12,”。厘米/秒”,9 = " "),# #粘贴(“embryo_tc_6_ 1:12,”。厘米/秒”,9 = " "),# #粘贴(“embryo_tc_8_ 1:12,”。厘米/秒”,9 = " "))# # # # #加载玻璃纸文件expdata < - ReadAffy(文件名= expfiles, # # celfile.path =“embryo_tc_array_data”) # # #设置实验数据(观察)# # pData (expdata) < - data.frame (“time.h”=代表(1:12,3),# # row.names = rownames (pData (expdata))) # # #运行mmgMOS处理(需要几分钟完成)# # drosophila_mmgmos_exprs < - mmgMOS (expdata) # # drosophila_mmgmos_fragment <——drosophila_mmgmos_exprs # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # #代码块6号:tigre_quick。Rnw: 110 - 113 (eval = FALSE) # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # drosophila_gpsim_fragment < - - - - - - # # processData (drosophila_mmgmos_fragment, # #实验=代表(1:3,每个= 12))# # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # #代码块7号:tigre_quick。Rnw: 121 - 122 # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # #数据(drosophila_gpsim_fragment) # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # #代码块8号:tigre_quick。Rnw: 129 - 141 # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # #的探头标识特遣部队“双胞胎”双胞胎< -“143396 _at”#的探头标识目标基因目标< -“152715 _at”#学习模型只使用一个< 3重复的数据模型——GPLearn (drosophila_gpsim_fragment [1:12], TF =双胞胎,目标=目标,useGpdisim = TRUE,安静= TRUE) #显示模型参数显示(模型)# # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # #代码块9号:tigre_quick。Rnw: 147 - 148 (eval = FALSE) # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # GPPlot(模型)# # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # #代码块10号:tigre_quick。Rnw: 154 - 155 # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # GPPlot(模型)# # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # #代码块11号:sessionInfo # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # sessionInfo ()