版本2.0.6（2015-06-15）的更改修复了另一个错误，该错误是检查是否将所有共同分析的BAM映射到相同的参考基因组-----------------------------------------------------------------------------------------------------版本2.0.5（2015-06-10）o修复了检查是否将所有共同分析的BAM映射到该错误，将其映射到该错误same reference genome ------------------------------------- Changes in version 2.0.4 (2015-06-05）o修复了plotcNA的错误，导致绘图过程中的染色体混合----------------------------------------------------------------------------------------------------------------------版本2.0.3（2015-05-06）的更改o在Coperwriter日志文件中包括Mad-values -----------------------------------------------------------------------------------------------版本2.0.2（2015-04-24）o修复了在某些情况下抛出错误消息的错误，该错误消息不会坐标为.bam文件 --------------------------------------------版本2.0.1（2015-04-18）o实施重置原始撰稿人函数退出后的工作目录离子3.2 o更新说明文件o修复了错误，导致未能计算Leesses -------------------------------------------------------------------------------------------------------------------------------- 版本（版本2.0）-------------------------------------------------------------版本1.99.4的更改（2015-04-08）o固定的错误与记录有关的错误何时未索引。------版本1.99.3（2015-04-06）的更改o修复了与.bam文件的排序模式相关的错误-----------------------------------------------------------------------------版本1.99.2（2015-03-21）o提供了允许r cmd检查的小插图-NO-Build-vignettes in <5min o固定的次要错误影响运行，其中并非所有样本都通过撰稿人函数分析所有样本o o包括对.bam文件的排序测试o改进的错误消息o固定的次要错误影响样品的绘制o固定的较小错误，在处理> 100个样本时导致错误导致错误 simultaneously o Added support for capture regions bed files lacking the correct chromosome name prefix o Fixed minor bug affecting read count statistics on single-sample analysis ------------------------------------- Changes in version 1.99.0 (2015-03-05) o Released new version o Improved the speed of the package o Implemented logging with the futile.logger package o Replaced direct slot or field access with the use of accessor functions o Implemented text wrapping o Replaced the use of bed-file format with GRanges objects o Created annotation and experiment packages o Addressed all NOTES upon R CMD CHECK o Restore options upon exit o Adjusted version numbering to 1.99.0 o Implemented BiocParallel for parallel computing o Changed name from ENCODER to CopywriteR o Shortened lines to 80 characters o Added NEWS file o Changed F to FALSE o Changed T to TRUE o Added biocViews o Changed version to 0.99.0