## try http:// if https:// URLs are not supported source("//www.anjoumacpherson.com/biocLite.R") biocLite("chromstaR")

DOI:10.18129/B9.bioc.chromstaR

Combinatorial and Differential Chromatin State Analysis for ChIP-Seq Data

Bioconductor version: Release (3.5)

This package implements functions for combinatorial and differential analysis of ChIP-seq data. It includes uni- and multivariate peak-calling, export to genome browser viewable files, and functions for enrichment analyses.

Author: Aaron Taudt, Maria Colome Tatche, Matthias Heinig, Minh Anh Nguyen

Maintainer: Aaron Taudt

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported source("//www.anjoumacpherson.com/biocLite.R") biocLite("chromstaR")

Documentation

查看文档的版本包age installed in your system, start R and enter:

browseVignettes("chromstaR")

PDF	R Script	The chromstaR user's guide
PDF		Reference Manual
Text		NEWS

Details

biocViews	ChIPSeq,DifferentialPeakCalling,HiddenMarkovModel,HistoneModification,MultipleComparison,Software
Version	1.2.0
In Bioconductor since	BioC 3.4 (R-3.3) (1 year)
License	Artistic-2.0
Depends	R (>= 3.3),GenomicRanges,ggplot2,chromstaRData
Imports	methods, utils, grDevices, graphics, stats,foreach,doParallel,S4Vectors,GenomeInfoDb,IRanges,reshape2,Rsamtools,GenomicAlignments,bamsignals,mvtnorm
LinkingTo
Suggests	knitr,BiocStyle,testthat,biomaRt,ggbio
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report

Package Archives

Followbob 体育网址 instructions to use this package in your R session.

Source Package	chromstaR_1.2.0.tar.gz
Windows Binary	chromstaR_1.2.0.zip(32- & 64-bit)
Mac OS X 10.11 (El Capitan)	chromstaR_1.2.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/chromstaR
Package Short Url	//www.anjoumacpherson.com/packages/chromstaR/
Package Downloads Report	Download Stats