## try http:// if https:// URLs are not supported source("//www.anjoumacpherson.com/biocLite.R") biocLite("annotate")

DOI:10.18129/B9.bioc.annotate

Annotation for microarrays

Bioconductor version: Release (3.5)

Using R enviroments for annotation.

Author: R. Gentleman

Maintainer: Bioconductor Package Maintainer

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported source("//www.anjoumacpherson.com/biocLite.R") biocLite("annotate")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("annotate")

PDF	R Script	Annotation Overview
PDF	R Script	Basic GO Usage
PDF	R Script	HowTo: Get HTML Output
PDF	R Script	HowTo: use chromosomal information
PDF	R Script	HOWTO: Use the online query tools
PDF	R Script	Using Affymetrix Probe Level Data
PDF	R Script	Using Data Packages
PDF	R Script	Using the homology package
PDF		Reference Manual
Text		NEWS

Details

biocViews	Annotation,GO,Pathways,Software
Version	1.54.0
In Bioconductor since	BioC 1.6 (R-2.1) or earlier (> 12.5 years)
License	Artistic-2.0
Depends	R (>= 2.10),AnnotationDbi(>= 1.27.5),XML
Imports	Biobase,DBI,xtable, graphics, utils, stats, methods,BiocGenerics(>= 0.13.8),RCurl
LinkingTo
Suggests	hgu95av2.db,genefilter,Biostrings(>= 2.25.10),IRanges,rae230a.db,rae230aprobe,tkWidgets,GO.db,org.Hs.eg.db,org.Mm.eg.db,hom.Hs.inp.db,humanCHRLOC,Rgraphviz,RUnit
SystemRequirements
Enhances
URL
Depends On Me	ChromHeatMap,GeneAnswers,geneplotter,GOSim,GRridge,GSEABase,idiogram,macat,MGFM,MineICA,MLInterfaces,Neve2006,PCpheno,phenoTest,PREDA,PREDAsampledata,RpsiXML,sampleClassifier,ScISI,SemDist
Imports Me	CAFE,Category,categoryCompare,CNEr,codelink,debrowser,DOQTL,DrugVsDisease,facopy,gCMAP,gCMAPWeb,GeneAnswers,genefilter,GlobalAncova,globaltest,GOstats,lumi,methyAnalysis,methylumi,MGFR,mvGST,phenoTest,qpgraph,ReportingTools,ScISI,splicegear,systemPipeR,tigre
Suggests Me	adme16cod.db,ag.db,ath1121501.db,BiocCaseStudies,BiocGenerics,biomaRt,bovine.db,canine.db,canine2.db,celegans.db,chicken.db,clariomdhumanprobeset.db,clariomdhumantranscriptcluster.db,clariomshumanhttranscriptcluster.db,clariomshumantranscriptcluster.db,clariomsmousehttranscriptcluster.db,clariomsmousetranscriptcluster.db,clariomsrathttranscriptcluster.db,clariomsrattranscriptcluster.db,drosgenome1.db,drosophila2.db,ecoli2.db,GenomicRanges,GGHumanMethCancerPanelv1.db,GlobalAncova,GOstats,GSAR,GSEAlm,h10kcod.db,h20kcod.db,hcg110.db,hgfocus.db,hgu133a.db,hgu133a2.db,hgu133b.db,hgu133plus2.db,hgu219.db,hgu95a.db,hgu95av2.db,hgu95b.db,hgu95c.db,hgu95d.db,hgu95e.db,hguatlas13k.db,hgubeta7.db,hguDKFZ31.db,hgug4100a.db,hgug4101a.db,hgug4110b.db,hgug4111a.db,hgug4112a.db,hgug4845a.db,hguqiagenv3.db,hi16cod.db,hs25kresogen.db,Hs6UG171.db,HsAgilentDesign026652.db,hta20probeset.db,hta20transcriptcluster.db,hthgu133a.db,hthgu133b.db,hu35ksuba.db,hu35ksubb.db,hu35ksubc.db,hu35ksubd.db,hu6800.db,huex10stprobeset.db,huex10sttranscriptcluster.db,hugene10stprobeset.db,hugene10sttranscriptcluster.db,hugene11stprobeset.db,hugene11sttranscriptcluster.db,hugene20stprobeset.db,hugene20sttranscriptcluster.db,hugene21stprobeset.db,hugene21sttranscriptcluster.db,HuO22.db,hwgcod.db,IlluminaHumanMethylation27k.db,IlluminaHumanMethylation450k.db,illuminaHumanv1.db,illuminaHumanv2.db,illuminaHumanv2BeadID.db,illuminaHumanv3.db,illuminaHumanv4.db,illuminaHumanWGDASLv3.db,illuminaHumanWGDASLv4.db,illuminaMousev1.db,illuminaMousev1p1.db,illuminaMousev2.db,illuminaRatv1.db,indac.db,JazaeriMetaData.db,LAPOINTE.db,lumiHumanAll.db,lumiMouseAll.db,lumiRatAll.db,m10kcod.db,m20kcod.db,maigesPack,metagenomeSeq,mgu74a.db,mgu74av2.db,mgu74b.db,mgu74bv2.db,mgu74c.db,mgu74cv2.db,mguatlas5k.db,mgug4104a.db,mgug4120a.db,mgug4121a.db,mgug4122a.db,mi16cod.db,miRBaseVersions.db,MLP,mm24kresogen.db,MmAgilentDesign026655.db,moe430a.db,moe430b.db,moex10stprobeset.db,moex10sttranscriptcluster.db,mogene10stprobeset.db,mogene10sttranscriptcluster.db,mogene11stprobeset.db,mogene11sttranscriptcluster.db,mogene20stprobeset.db,mogene20sttranscriptcluster.db,mogene21stprobeset.db,mogene21sttranscriptcluster.db,mouse4302.db,mouse430a2.db,mpedbarray.db,mta10probeset.db,mta10transcriptcluster.db,mu11ksuba.db,mu11ksubb.db,Mu15v1.db,mu19ksuba.db,mu19ksubb.db,mu19ksubc.db,Mu22v3.db,mwgcod.db,Norway981.db,nugohs1a520180.db,nugomm1a520177.db,oneChannelGUI,OperonHumanV3.db,org.Ag.eg.db,org.At.tair.db,org.Bt.eg.db,org.Ce.eg.db,org.Cf.eg.db,org.Dm.eg.db,org.Dr.eg.db,org.EcK12.eg.db,org.EcSakai.eg.db,org.Gg.eg.db,org.Hs.eg.db,org.Mm.eg.db,org.Mmu.eg.db,org.Pf.plasmo.db,org.Pt.eg.db,org.Rn.eg.db,org.Sc.sgd.db,org.Sco.eg.db,org.Ss.eg.db,org.Tgondii.eg.db,org.Xl.eg.db,PartheenMetaData.db,pedbarrayv10.db,pedbarrayv9.db,POCRCannotation.db,porcine.db,puma,r10kcod.db,rae230a.db,rae230b.db,raex10stprobeset.db,raex10sttranscriptcluster.db,ragene10stprobeset.db,ragene10sttranscriptcluster.db,ragene11stprobeset.db,ragene11sttranscriptcluster.db,ragene20stprobeset.db,ragene20sttranscriptcluster.db,ragene21stprobeset.db,ragene21sttranscriptcluster.db,rat2302.db,rgu34a.db,rgu34b.db,rgu34c.db,rguatlas4k.db,rgug4105a.db,rgug4130a.db,rgug4131a.db,ri16cod.db,RnAgilentDesign028282.db,RnBeads,rnu34.db,Roberts2005Annotation.db,rta10probeset.db,rta10transcriptcluster.db,rtu34.db,rwgcod.db,SHDZ.db,siggenes,SummarizedExperiment,u133x3p.db,xlaevis.db,yeast2.db,ygs98.db,zebrafish.db
Build Report

Package Archives

Followbob 体育网址 instructions to use this package in your R session.

Source Package	annotate_1.54.0.tar.gz
Windows Binary	annotate_1.54.0.zip
Mac OS X 10.11 (El Capitan)	annotate_1.54.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/annotate
Package Short Url	//www.anjoumacpherson.com/packages/annotate/
Package Downloads Report	Download Stats