##尝试http://如果https:// url不支持source("//www.anjoumacpherson.com/biocLite.R") biocLite("cn.mops")

此包适用于Bioconductor的3.4版本;有关稳定的最新发布版本，请参见cn.mops．

cn.mops- Mixture of Poissons for CNV detection in NGS data

Bioconductor版本:3.4

cn.mops(Copy Number estimation by a Mixture Of PoissonS) is a data processing pipeline for copy number variations and aberrations (CNVs and CNAs) from next generation sequencing (NGS) data. The package supplies functions to convert BAM files into read count matrices or genomic ranges objects, which are the input objects for cn.mops. cn.mops models the depths of coverage across samples at each genomic position. Therefore, it does not suffer from read count biases along chromosomes. Using a Bayesian approach, cn.mops decomposes read variations across samples into integer copy numbers and noise by its mixture components and Poisson distributions, respectively. cn.mops guarantees a low FDR because wrong detections are indicated by high noise and filtered out. cn.mops is very fast and written in C++.

作者:Guenter Klambauer

维护者:Guenter Klambauer

安装

要安装这个包，开始R，然后输入:

##尝试http://如果https:// url不支持source("//www.anjoumacpherson.com/biocLite.R") biocLite("cn.mops")

文档

要查看系统中安装的此包版本的文档，请从R开始并输入:

browseVignettes(“cn.mops”)

PDF	R脚本	cn.mops: Manual for the R package
PDF		参考手册

细节

biocViews	CellBiology，CopyNumberVariation，遗传学，人类基因组单体型图，Homo_sapiens，测序，软件
版本	1.20.1
在Bioconductor公司	BioC 2.9 (R-2.14)(5.5年)
许可证	LGPL (>= 2.0)
取决于	R(>= 2.12)，方法，utils，统计，图形，并行，GenomicRanges
进口	BiocGenerics，Biobase，IRanges，Rsamtools，GenomeInfoDb，S4Vectors，exomeCopy
链接
建议	DNAcopy
SystemRequirements
增强了
URL	http://www.bioinf.jku.at/software/cnmops/cnmops.html
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进口我
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构建报告

包档案

遵循bob 体育网址 在R会话中使用这个包的说明。

包的来源	cn.mops_1.20.1.tar.gz
Windows二进制	cn.mops_1.20.1.zip(32- & 64位)
Mac OS X 10.9(小牛队)	cn.mops_1.20.1.tgz
Subversion源	(用户名/密码:只读的)
Git源代码	https://github.com/Bioconductor-mirror/cn.mops/tree/release-3.4
包短Url	//www.anjoumacpherson.com/packages/cn.mops/
软件包下载报告	下载数据