## try http:// if https:// URLs are not supported source("//www.anjoumacpherson.com/biocLite.R") biocLite("chipseq")

This package is for version 3.4 of Bioconductor; for the stable, up-to-date release version, seechipseq.

chipseq: A package for analyzing chipseq data

Bioconductor version: 3.4

Tools for helping process short read data for chipseq experiments

Author: Deepayan Sarkar, Robert Gentleman, Michael Lawrence, Zizhen Yao

Maintainer: Bioconductor Package Maintainer

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported source("//www.anjoumacpherson.com/biocLite.R") biocLite("chipseq")

Documentation

查看文档的版本包age installed in your system, start R and enter:

browseVignettes("chipseq")

PDF	R Script	A Sample ChIP-Seq analysis workflow
PDF		Reference Manual

Details

biocViews	ChIPSeq,Coverage,DataImport,QualityControl,Sequencing,Software
Version	1.24.0
In Bioconductor since	BioC 2.5 (R-2.10) (7.5 years)
License	Artistic-2.0
Depends	R (>= 2.10), methods,BiocGenerics(>= 0.1.0),S4Vectors(>= 0.9.25),IRanges(>= 1.99.1),GenomicRanges(>= 1.17.7),ShortRead
Imports	methods, stats,lattice,BiocGenerics,IRanges,GenomicRanges,ShortRead
LinkingTo
Suggests	BSgenome,GenomicFeatures,TxDb.Mmusculus.UCSC.mm9.knownGene
SystemRequirements
Enhances
URL
Depends On Me	PING
Imports Me	ChIPQC,CopywriteR,HTSeqGenie,soGGi,transcriptR
Suggests Me	GenoGAM,ggbio,oneChannelGUI
Build Report

Package Archives

Followbob 体育网址 instructions to use this package in your R session.

Package Source	chipseq_1.24.0.tar.gz
Windows Binary	chipseq_1.24.0.zip(32- & 64-bit)
Mac OS X 10.9 (Mavericks)	chipseq_1.24.0.tgz
Subversion source	(username/password: readonly)
Git source	https://github.com/Bioconductor-mirror/chipseq/tree/release-3.4
Package Short Url	//www.anjoumacpherson.com/packages/chipseq/
Package Downloads Report	Download Stats