## try http:// if https:// URLs are not supported source("//www.anjoumacpherson.com/biocLite.R") biocLite("MSnbase")

This package is for version 3.4 of Bioconductor; for the stable, up-to-date release version, seeMSnbase.

Base Functions and Classes for MS-based Proteomics

Bioconductor version: 3.4

Basic plotting, data manipulation and processing of MS-based Proteomics data.

Author: Laurent Gatto with contributions from Guangchuang Yu, Samuel Wieczorek, Vasile-Cosmin Lazar, Vladislav Petyuk, Thomas Naake, Richie Cotton, Martina Fisher, Johannes Rainer and Sebastian Gibb.

Maintainer: Laurent Gatto

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported source("//www.anjoumacpherson.com/biocLite.R") biocLite("MSnbase")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("MSnbase")

PDF	R Script	Base Functions and Classes for MS-based Proteomics
PDF	R Script	MSnbase development
PDF	R Script	MSnbase IO capabilities
HTML	R Script	MSnbase benchmarking
PDF		Reference Manual
Text		NEWS

Details

biocViews	DataImport,Infrastructure,MassSpectrometry,Proteomics,QualityControl,Software
Version	2.0.2
In Bioconductor since	BioC 2.8 (R-2.13) (6 years)
License	Artistic-2.0
Depends	R (>= 3.1), methods,BiocGenerics(>= 0.7.1),Biobase(>= 2.15.2),mzR(>= 2.7.6),BiocParallel,ProtGenerics(>= 1.5.1)
Imports	plyr,IRanges,preprocessCore,vsn, grid,reshape2, stats4,affy,impute,pcaMethods,mzID(>= 1.5.2),MALDIquant(>= 1.12),digest,lattice,ggplot2,S4Vectors,XML,Rcpp
LinkingTo	Rcpp
Suggests	testthat,pryr,gridExtra,microbenchmark,zoo,knitr(>= 1.1.0),rols,Rdisop,pRoloc,pRolocdata(> = 1.7.1上),msdata(>= 0.12.2),roxygen2,rgl,rpx,AnnotationHub,BiocStyle,rmarkdown,imputeLCMD,norm,gplots,shiny
SystemRequirements
Enhances
URL	https://github.com/lgatto/MSnbase
BugReports	https://github.com/lgatto/MSnbase/issues
Depends On Me	msmsEDA,msmsTests,ProCoNA,pRoloc,pRolocdata,pRolocGUI,proteoQC,RforProteomics,synapter
Imports Me	DAPAR,DAPARdata,MSnID,MSstats,Pbase,ProteomicsAnnotationHubData,RMassBank
Suggests Me	AnnotationHub,biobroom,BiocGenerics,isobar,qcmetrics,readat,rpx
Build Report

Package Archives

Followbob 体育网址 在你使用这个包的指令ur R session.

Package Source	MSnbase_2.0.2.tar.gz
Windows Binary	MSnbase_2.0.2.zip(32- & 64-bit)
Mac OS X 10.9 (Mavericks)	MSnbase_2.0.2.tgz
Subversion source	(username/password: readonly)
Git source	https://github.com/Bioconductor-mirror/MSnbase/tree/release-3.4
Package Short Url	//www.anjoumacpherson.com/packages/MSnbase/
Package Downloads Report	Download Stats