biocViews |
注释,报道,遗传学,GenomeAnnotation,基础设施,测序,软件 |
版本 |
1.26.4 |
Bioconductor自 |
BioC 2.6 (r - 2.11)(7年) |
许可证 |
艺术- 2.0 |
取决于 |
R(> = 2.10)、方法stats4,BiocGenerics(> = 0.17.5),S4Vectors(> = 0.9.47),IRanges(> = 2.7.8),GenomeInfoDb(> = 1.1.20) |
进口 |
跑龙套,统计数据,XVector |
链接 |
S4Vectors,IRanges |
建议 |
Biobase,AnnotationDbi(> = 1.21.1),注释,Biostrings(> = 2.25.3),Rsamtools(> = 1.13.53),SummarizedExperiment(> = 0.1.5),矩阵,GenomicAlignments,rtracklayer,BSgenome,GenomicFeatures,Gviz,VariantAnnotation,AnnotationHub,DESeq2,DEXSeq,刨边机,KEGGgraph,BiocStyle,消化,RUnit,BSgenome.Hsapiens.UCSC.hg19,BSgenome.Scerevisiae.UCSC.sacCer2,KEGG.db,hgu95av2.db,org.Hs.eg.db,org.Mm.eg.db,org.Sc.sgd.db,pasilla,pasillaBamSubset,TxDb.Athaliana.BioMart.plantsmart22,TxDb.Dmelanogaster.UCSC.dm3.ensGene,TxDb.Hsapiens.UCSC.hg19.knownGene,BSgenome.Mmusculus.UCSC.mm10,TxDb.Mmusculus.UCSC.mm10.knownGene,RNAseqData.HNRNPC.bam.chr14,hgu95av2probe |
SystemRequirements |
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增强了 |
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URL |
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取决于我 |
AllelicImbalance,AneuFinder,annmap,AnnotationHubData,ASpli,BaalChIP,Basic4Cseq,BasicSTARRseq,baySeq,biomvRCNS,BiSeq,BPRMeth,BSgenome,bsseq,BubbleTree,bumphunter,咖啡馆,卡斯珀,ChAMPdata,cheung2010,嵌合体,ChIPComp,ChIPpeakAnno,ChIPQC,chipseq,chroGPS,chromPlot,chromstaR,CINdex,cleanUpdTSeq,cn.mops,CNPBayes,cnvGSA,CNVPanelizer,compEpiTools,consensusSeekeR,CSAR,csaw,deepSNV,DESeq2,DEXSeq,DiffBind,diffHic,DMRcaller,DMRcatedata,DMRforPairs,DNAshapeR,DOQTL,EatonEtAlChIPseq,EnrichedHeatmap,ensembldb,ensemblVEP,epigenomix,exomeCopy,fastseg,fCCAC,FourCSeq,FunChIP,GeneBreak,geneRxCluster,GenoGAM,GenomicAlignments,GenomicFeatures,GenomicFiles,GenomicTuples,genoset,geuvStore2,gmapR,GMRP,哥特,GreyListChIP,groHMM,gtrellis,GUIDEseq,吉他,Gviz,HelloRanges,hiAnnotator,HilbertCurve,HiTC,htSeqTools,IdeoViz,InPAS,intansv,InteractionSet,isomiRs,工商管理硕士,metagene,methyAnalysis,methylKit,methylPipe,minfi,MutationalPatterns,OmicCircos,PGA,平,podkat,QuasR,r3Cseq,Rariant,Rcade,收回,地区,rfPred,rGREAT,riboSeqR,RIPSeeker,RnBeads,RnBeads.hg19,RnBeads.hg38,RnBeads.mm10,RnBeads.mm9,RnBeads.rn5,Rsamtools,RSVSim,rtracklayer,segmentSeq,seqbias,SGSeq,SICtools,SigFuge,击杀,SNPhood,SNPlocs.Hsapiens.dbSNP.20090506,SNPlocs.Hsapiens.dbSNP.20100427,SNPlocs.Hsapiens.dbSNP.20101109,SNPlocs.Hsapiens.dbSNP.20110815,SNPlocs.Hsapiens.dbSNP.20111119,SNPlocs.Hsapiens.dbSNP.20120608,SNPlocs.Hsapiens.dbSNP141.GRCh38,SNPlocs.Hsapiens.dbSNP142.GRCh37,SomaticSignatures,SummarizedExperiment,TarSeqQC,TitanCNA,trackViewer,TransView,tra利用,VanillaICE,VariantAnnotation,VariantTools,vtpnet,wavClusteR,XtraSNPlocs.Hsapiens.dbSNP141.GRCh38,YAPSA,yriMulti |
进口我 |
ALDEx2,高山,annotatr,ArrayExpressHTS,BadRegionFinder,舞会礼服,bamsignals,BBCAnalyzer,beadarray,击败,biovizBase,BiSeq,BSgenome,篮球选手,CexoR,cgdv17,冠军,chipenrich,chipenrich.data,ChIPseeker,chipseq,ChIPseqR,chromDraw,ChromHeatMap,cn,CNPBayes,彗星,contiBAIT,conumee,copynumber,文案,COSMIC.67,CoverageView,crisprseekplus,CrispRVariants,customProDB,DChIPRep,debrowser,位深蓝,反编排,derfinder,derfinderPlot,diffloop,DMRcate,DRIMSeq,easyRNASeq,EDASeq,埃尔默,ELMER.data,epivizr,epivizrData,erma,fitCons.UCSC.hg19,啪嗒啪嗒地响,FourCSeq,FunciSNP,genbankr,geneAttribution,GeneGeneInteR,genomation,genomeIntervals,GenomicAlignments,GenomicInteractions,genotypeeval,GenVisR,GGBase,ggbio,GGtools,GoogleGenomics,gQTLBase,gQTLstats,gwascat,h5vc,hiReadsProcessor,HTSeqGenie,检查,iva,JunctionSeq,leeBamViews,萝拉,光民,M3D,MADSEQ,MafDb.1Kgenomes.phase1.hs37d5,MafDb.1Kgenomes.phase3.hs37d5,MafDb.ESP6500SI.V2.SSA137,MafDb.ESP6500SI.V2.SSA137.GRCh38,MafDb.ESP6500SI.V2.SSA137.hs37d5,MafDb.ExAC.r0.3.1.nonTCGA.snvs.hs37d5,MafDb.ExAC.r0.3.1.snvs.hs37d5,餐,MEDIPS,methyAnalysis,MethylSeekR,methylumi,MinimumDistance,MMDiff2,马赛克,motifbreakR,MultiAssayExperiment,MultiDataSet,NarrowPeaks,normr,诊断,oligoClasses,OrganismDbi,Pbase,pcaExplorer,pepDat,pepStat,phastCons100way.UCSC.hg19,phastCons100way.UCSC.hg38,phastCons7way.UCSC.hg38,π,图片,pqsfinder,prebs,proBAMr,PureCN,Pviz,pwOmics,QDNAseq,qpgraph,qsea,R3CPET,R453Plus1Toolbox,RareVariantVis,美国广播公司,rCGH,重新计票,地区,regionReport,Repitools,RiboProfiling,RNAprobR,rnaSeqMap,咆哮,seq2pathway,SeqArray,seqPattern,seqplots,SeqVarTools,ShortRead,签名者,simulatorZ,SNPchip,SNPlocs.Hsapiens.dbSNP.20090506,SNPlocs.Hsapiens.dbSNP.20100427,SNPlocs.Hsapiens.dbSNP.20101109,SNPlocs.Hsapiens.dbSNP.20110815,SNPlocs.Hsapiens.dbSNP.20111119,SNPlocs.Hsapiens.dbSNP.20120608,SNPlocs.Hsapiens.dbSNP141.GRCh38,SNPlocs.Hsapiens.dbSNP142.GRCh37,SNPlocs.Hsapiens.dbSNP144.GRCh37,SNPlocs.Hsapiens.dbSNP144.GRCh38,soGGi,SomaticCancerAlterations,连接工具,SplicingGraphs,分裂,斯坦,SVM2CRM,systemPipeR,TCGAbiolinks,TFBSTools,tracktables,transcriptR,三层,TVTB,VariantFiltering,waveTiling,XtraSNPlocs.Hsapiens.dbSNP141.GRCh38,XtraSNPlocs.Hsapiens.dbSNP144.GRCh37,XtraSNPlocs.Hsapiens.dbSNP144.GRCh38 |
建议我 |
alternativeSplicingEvents.hg19,AnnotationHub,BeadArrayUseCases,biobroom,BiocGenerics,BiocParallel,芝加哥,腰带,GenomeInfoDb,GeuvadisTranscriptExpr,HDF5Array,interactiveDisplay,IRanges,metaseqR,海市蜃楼,NarrowPeaks,NGScopy,RTCGA,S4Vectors,SeqGSEA,Single.mTEC.Transcriptomes |
构建报告 |
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