| biocViews |
注释,报道,遗传学,GenomeAnnotation,基础设施,测序,软件 |
| 版本 |
1.22.4 |
| Bioconductor自 |
BioC 2.6 (r - 2.11)(6年) |
| 许可证 |
艺术- 2.0 |
| 取决于 |
R(> = 2.10),方法,BiocGenerics(> = 0.16.1),S4Vectors(> = 0.8.6),IRanges(> = 2.4.6),GenomeInfoDb(> = 1.1.20) |
| 进口 |
跑龙套,统计数据,XVector |
| 链接 |
S4Vectors,IRanges |
| 建议 |
Biobase,AnnotationDbi(> = 1.21.1),注释,Biostrings(> = 2.25.3),Rsamtools(> = 1.13.53),SummarizedExperiment(> = 0.1.5),GenomicAlignments,rtracklayer,BSgenome,GenomicFeatures,Gviz,VariantAnnotation,AnnotationHub,DESeq,DEXSeq,刨边机,KEGGgraph,BiocStyle,消化,RUnit,BSgenome.Hsapiens.UCSC.hg19,BSgenome.Scerevisiae.UCSC.sacCer2,KEGG.db,hgu95av2.db,org.Hs.eg.db,org.Mm.eg.db,org.Sc.sgd.db,pasilla,pasillaBamSubset,TxDb.Athaliana.BioMart.plantsmart22,TxDb.Dmelanogaster.UCSC.dm3.ensGene,TxDb.Hsapiens.UCSC.hg19.knownGene |
| SystemRequirements |
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| 增强了 |
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| URL |
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| 取决于我 |
AllelicImbalance,annmap,AnnotationHubData,Basic4Cseq,baySeq,biomvRCNS,BiSeq,BSgenome,bsseq,BubbleTree,bumphunter,咖啡馆,卡斯珀,cheung2010,嵌合体,ChIPComp,ChIPpeakAnno,ChIPQC,chipseq,cleanUpdTSeq,cn.mops,CNPBayes,cnvGSA,CNVPanelizer,compEpiTools,CSAR,csaw,DASiR,deepSNV,DESeq2,DEXSeq,DiffBind,diffHic,DMRcaller,DMRcatedata,DMRforPairs,DOQTL,EatonEtAlChIPseq,EnrichedHeatmap,ensembldb,ensemblVEP,epigenomix,exomeCopy,fastseg,FourCSeq,GeneBreak,geneRxCluster,基因组,GenomicAlignments,GenomicFeatures,GenomicFiles,GenomicTuples,genoset,GenoView,geuvStore,ggtut,gmapR,哥特,GreyListChIP,groHMM,吉他,Gviz,hiAnnotator,HilbertCurve,HiTC,htSeqTools,IdeoViz,InPAS,intansv,工商管理硕士,metagene,methyAnalysis,methylPipe,minfi,MMDiff,OmicCircos,PGA,平,podkat,QuasR,r3Cseq,Rariant,Rcade,地区,rfPred,rGREAT,riboSeqR,RIPSeeker,RnBeads,RnBeads.hg19,RnBeads.hg38,RnBeads.mm10,RnBeads.mm9,RnBeads.rn5,Rsamtools,RSVSim,rtracklayer,segmentSeq,seqbias,SGSeq,SigFuge,SNPhood,SNPlocs.Hsapiens.dbSNP.20090506,SNPlocs.Hsapiens.dbSNP.20100427,SNPlocs.Hsapiens.dbSNP.20101109,SNPlocs.Hsapiens.dbSNP.20110815,SNPlocs.Hsapiens.dbSNP.20111119,SNPlocs.Hsapiens.dbSNP.20120608,SNPlocs.Hsapiens.dbSNP141.GRCh38,SNPlocs.Hsapiens.dbSNP142.GRCh37,SomatiCA,SomaticSignatures,SummarizedExperiment,TarSeqQC,trackViewer,TransView,tra利用,VanillaICE,VariantAnnotation,VariantTools,vtpnet,wavClusteR,XtraSNPlocs.Hsapiens.dbSNP141.GRCh38 |
| 进口我 |
ALDEx2,ArrayExpressHTS,舞会礼服,bamsignals,beadarray,击败,biovizBase,BiSeq,BSgenome,篮球选手,CexoR,cgdv17,冠军,chipenrich,chipenrich.data,ChIPseeker,chipseq,ChIPseqR,chromDraw,cn,彗星,conumee,copynumber,文案,COSMIC.67,CoverageView,customProDB,DChIPRep,derfinder,derfinderPlot,DMRcate,easyRNASeq,EDASeq,埃尔默,ELMER.data,epivizr,erma,啪嗒啪嗒地响,FourCSeq,FunciSNP,genomation,genomeIntervals,GenomicAlignments,GenomicInteractions,genotypeeval,GGBase,ggbio,GGtools,GoogleGenomics,gQTLBase,gQTLstats,GUIDEseq,gwascat,h5vc,hiReadsProcessor,HTSeqGenie,检查,iva,LedPred,leeBamViews,萝拉,光民,M3D,MafDb.ALL.wgs.phase1.release.v3.20101123,MafDb.ALL.wgs.phase3.release.v5a.20130502,MafDb.ALL.wgs.phase3.release.v5b.20130502,MafDb.ESP6500SI.V2.SSA137,MafDb.ExAC.r0.3.sites,餐,MEDIPS,methyAnalysis,MethylSeekR,methylumi,MinimumDistance,MMDiff,motifbreakR,NarrowPeaks,诊断,oligoClasses,OrganismDbi,Pbase,pepDat,pepStat,phastCons100way.UCSC.hg19,phastCons100way.UCSC.hg38,phastCons7way.UCSC.hg38,图片,prebs,proBAMr,Pviz,pwOmics,qpgraph,R3CPET,R453Plus1Toolbox,RareVariantVis,rCGH,地区,regionReport,Repitools,rgsepd,RiboProfiling,RNAprobR,rnaSeqMap,咆哮,seq2pathway,SeqArray,seqPattern,seqplots,SeqVarTools,ShortRead,SICtools,simulatorZ,SNPchip,SNPlocs.Hsapiens.dbSNP.20090506,SNPlocs.Hsapiens.dbSNP.20100427,SNPlocs.Hsapiens.dbSNP.20101109,SNPlocs.Hsapiens.dbSNP.20110815,SNPlocs.Hsapiens.dbSNP.20111119,SNPlocs.Hsapiens.dbSNP.20120608,SNPlocs.Hsapiens.dbSNP141.GRCh38,SNPlocs.Hsapiens.dbSNP142.GRCh37,SNPlocs.Hsapiens.dbSNP144.GRCh37,SNPlocs.Hsapiens.dbSNP144.GRCh38,soGGi,SomatiCA,SomaticCancerAlterations,连接工具,SplicingGraphs,SVM2CRM,systemPipeR,TCGAbiolinks,TFBSTools,ToPASeq,tracktables,三层,VariantFiltering,waveTiling,XtraSNPlocs.Hsapiens.dbSNP141.GRCh38,XtraSNPlocs.Hsapiens.dbSNP144.GRCh37,XtraSNPlocs.Hsapiens.dbSNP144.GRCh38 |
| 建议我 |
AnnotationHub,BeadArrayUseCases,biobroom,BiocGenerics,BiocParallel,腰带,GenomeInfoDb,gtrellis,interactiveDisplay,IRanges,metaseqR,海市蜃楼,NarrowPeaks,NGScopy,SeqGSEA,斯坦 |
| 构建报告 |
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