SingleCellExperiment

DOI:10.18129 / B9.bioc.SingleCellExperiment

这个包是3.16版本Bioconductor;的稳定,最新的发布版本,请参阅SingleCellExperiment。

S4单细胞数据类

Bioconductor版本:3.16

定义了一个从单细胞实验S4类来存储数据。这包括专门的方法来存储和检索信息激增,降维的坐标和尺寸因素对于每个单元格,还是和往常一样基因和库的元数据。

作者:亚伦Lun (aut (cph),大卫。Risso (cre, aut cph],基冈Korthauer[所有],凯文Rue-Albrecht(施)

维护人员:大卫Risso < Risso。大卫。gmail.com >

安装

安装这个包,开始R(版本“4.2”)并输入:

如果(!要求(“BiocManager”,悄悄地= TRUE)) install.packages (“BiocManager”) BiocManager::安装(“SingleCellExperiment”)

R的旧版本,请参考适当的Bioconductor释放。

文档

查看文档的版本这个包安装在您的系统,开始R和输入:

browseVignettes (“SingleCellExperiment”)

HTML	R脚本	1。介绍SingleCellExperiment类
HTML	R脚本	2。应用在SingleCellExperiment对象
HTML	R脚本	3所示。在SingleCellExperiment类发展
PDF		参考手册
文本		新闻

细节

biocViews	DataImport,DataRepresentation,ImmunoOncology,基础设施,SingleCell,软件
版本	1.20.1
Bioconductor自	BioC 3.6 (r - 3.4)(5.5年)
许可证	GPL-3
取决于	SummarizedExperiment
进口	方法,跑龙套,统计数据,S4Vectors,BiocGenerics,GenomicRanges,DelayedArray
链接
建议	testthat,BiocStyle,rmarkdown knitr矩阵,scRNAseq(> = 2.9.1),Rtsne
SystemRequirements
增强了
URL
取决于我	基础知识,后面;,BayesSpace,催化剂,celda,CellBench,CelliD,CellTrails,印度豹,clusterExperiment,cydar,cytomapper,DropletUtils,ExperimentSubset,HCAData,imcdatasets,iSEE,iSEEhub,LoomExperiment,桅杆,米娅,MouseGastrulationData,MouseThymusAgeing,mumosa,muscData,NeuCA,POWSC,scAlign,scAnnotatR,scATAC.Explorer,嘘,scDataviz,scDblFinder,scGPS,schex,scPipe,食物,scRNAseq,天窗,singleCellTK,SpatialExperiment,飞溅,switchde,TENxBrainData,TENxIO,TENxPBMCData,tidySingleCellExperiment,TMExplorer,TrajectoryUtils,TreeSummarizedExperiment,三轮车,TSCAN,WeberDivechaLCdata,zinbwave
进口我	ADImpute,aggregateBioVar,airpart,ANCOMBC,APL,ASURAT,BASiCStan,bayNorm,BEARscc,BUSseq,ccfindR,CellMixS,Cepo,ChromSCape,CiteFuse,clustifyr,CoGAPS,conclus,调味品,科拉尔,命运,DifferentialRegulation,恐龙,截然不同的,dittoSeq,逃避,EWCE,fcoex,盛宴,鱼池,火焰,ggspavis,glmGamPoi,GSVA,河马,ILoReg,imcRtools,infercnv,IRISFGM,iSEEu,LineagePulse,lisaClust,mbkmeans,MetaNeighbor,miloR,miQC,MuData,马斯喀特,Nebulosa,netSmooth,NewWave,nnSVG,peco,phemd,pipeComp,SC3,SCArray,scBFA,scCB2,sccomp,scDD,scDDboost,scds,散粒,scmap,scMerge,scMET,SCnorm,司康饼,scp,scpdata,scReClassify,scRepertoire,颈背,用水晶球占卜,scTensor,scTGIF,scTreeViz,SingleCellMultiModal,激流回旋,弹弓,猎犬,SpatialFeatureExperiment,spatialHeatmap,spatialLIBD,spicyR,关注的焦点,SPsimSeq,standR,Statial,TabulaMurisSenisData,tradeSeq,traviz,treekoR,UCell,VAExprs,VDJdive,伶盗龙,“航行者”号,waddR,zellkonverter
建议我	ccImpute,CellaRepertorium,cellxgenedp,DEsingle,多萝西娅,DuoClustering2018,FCBF,FuseSOM,genomicInstability,GSE103322,杂环胺,HDF5Array,InteractiveComplexHeatmap,M3Drop,microbiomeDataSets,MOFA2,ontoProc,phenopath,后代,QFeatures,scBubbletree,scFeatureFilter,scPCA,scRecover,simpleSingleCell,单,TabulaMurisData,TREG
我的链接
构建报告

包档案

遵循bob 体育网址 指示在R会话中使用这个包。

源包	SingleCellExperiment_1.20.1.tar.gz
Windows二进制	SingleCellExperiment_1.20.1.zip
macOS二进制(x86_64)	SingleCellExperiment_1.20.1.tgz
macOS二进制(arm64)	SingleCellExperiment_1.20.1.tgz
源库	git克隆https://git.bioconductor.org/packages/SingleCellExperiment
源库(开发人员访问)	git克隆git@git.bioconductor.org:包/ SingleCellExperiment
Bioc包浏览器	https://code.bioconductor.org/browse/SingleCellExperiment/
包短Url	//www.anjoumacpherson.com/packages/SingleCellExperiment/
包下载报告	下载数据