BiocGenerics

DOI:10.18129 / B9.bioc.BiocGenerics

这个包是3.15版本Bioconductor;的稳定,最新的发布版本,请参阅BiocGenerics

S4 Bioconductor中使用的通用函数

Bioconductor版本:3.15

包定义了许多S4 Bioconductor中使用的通用函数。

作者:Bioconductor Dev团队

维修工:Bioconductor包维护者<维护者bioconductor.org >

从内部引用(R,回车引用(“BiocGenerics”)):

安装

安装这个包,开始R(版本“4.2”)并输入:

如果(!要求(“BiocManager”,悄悄地= TRUE)) install.packages (“BiocManager”) BiocManager::安装(“BiocGenerics”)

R的旧版本,请参考适当的Bioconductor释放

文档

PDF 参考手册

细节

biocViews 基础设施,软件
版本 0.42.0
Bioconductor自 BioC 2.10 (r - 2.15)(10.5年)
许可证 艺术- 2.0
取决于 R(> = 4.0.0)、方法、效用,图形,统计数据
进口 方法,跑龙套,图形,统计数据
链接
建议 Biobase,S4Vectors,IRanges,GenomicRanges,DelayedArray,Biostrings,Rsamtools,AnnotationDbi,affy,affyPLM,DESeq2,flowClust,MSnbase,注释,RUnit
SystemRequirements
增强了
URL //www.anjoumacpherson.com/packages/BiocGenerics
BugReports https://github.com/Bioconductor/BiocGenerics/issues
取决于我 ACME,affy,affyPLM,altcdfenvs,amplican,AnnotationDbi,AnnotationForge,AnnotationHub,ATACseqQC,beadarray,bioassayR,Biobase,Biostrings,bnbc,BSgenome,bsseq,红衣主教,类别,categoryCompare,ChAMPdata,chipseq,ChIPseqR,ChromHeatMap,clusterExperiment,codelink,consensusDE,consensusSeekeR,copynumber,CoreGx,CRISPRseek,腰带,DelayedArray,ensembldb,ensemblVEP,ExperimentHub,ExperimentHubData,GDSArray,geneplotter,GenomeInfoDb,genomeIntervals,GenomicAlignments,GenomicFeatures,GenomicFiles,GenomicRanges,GenomicScores,ggbio,girafe,,GSEABase,GUIDEseq,HelloRanges,interactiveDisplay,interactiveDisplayBase,IRanges,liftOver,工商管理硕士,MIGSA,MineICA,minfi,MLInterfaces,MotifDb,mpra,MSnbase,,NADfinder,ngsReports,益生元,OrganismDbi,pandaR,plethy,plyranges,PoTRA,profileplyr,PSICQUIC,PWMEnrich,QSutils,RareVariantVis,REDseq,Repitools,RnBeads,,rsbml,S4Vectors,shinyMethyl,ShortRead,simplifyEnrichment,soGGi,spqn,StructuralVariantAnnotation,SummarizedBenchmark,svaNUMT,svaRetro,TEQC,tigre,topdownr,topGO,撤销,UniProt.ws,updateObject,VanillaICE,VariantAnnotation,VariantFiltering,VCFArray,XVector,山药
进口我 a4Preproc,affycoretools,affylmGUI,AllelicImbalance,AneuFinder,annmap,注释,AnnotationHubData,ArrayExpressHTS,ASpli,atena,AUCell,自治,bambu,bamsignals,基础知识,后面;,beachmat,bigmelon,biocGraph,BiocIO,BiocSingular,biotmle,biovizBase,biscuiteer,BiSeq,blima,breakpointR,BrowserViz,BSgenome,BubbleTree,bumphunter,BUSpaRse,CAGEfightR,篮球选手,卡斯珀,celaref,CellaRepertorium,CellBench,cellHTS2,CellMixS,CellTrails,cghMCR,ChemmineDrugs,ChemmineOB,ChemmineR,别致的,ChIPComp,chipenrich,chipenrich.data,ChIPpeakAnno,ChIPQC,ChIPseeker,chipseq,chromstaR,chromVAR,西塞罗,clusterSeq,cn.mops,cn,CNVPanelizer,CNVRanger,可可,可乐,compEpiTools,CompoundDb,contiBAIT,crisprBase,crisprBowtie,crisprBwa,crisprScore,crlmm,crossmeta,csaw,ctgGEM,腰带,curatedCRCData,curatedOvarianData,cydar,dada2,dagLogo,DAMEfinder,ddCt,decompTumor2Sig,deconvR,DEGreport,DelayedDataFrame,derfinder,DEScan2,DESeq2,命运,DEWSeq,DEXSeq,diffcoexp,diffHic,DirichletMultinomial,DiscoRhythm,DRIMSeq,DropletUtils,DrugVsDisease,easyRNASeq,EBImage,EDASeq,eiR,eisaR,enhancerHomologSearch,enrichTF,epialleleR,epigenomix,epimutacions,epistack,EpiTxDb,epivizrChart,epivizrStandalone,erma,esATAC,exomePeak2,ExpHunterSuite,FamAgg,fastseg,ffpe,FindIT2,火焰,flowBin,flowClust,flowCore,flowFP,FlowSOM,flowSpecs,flowStats,flowWorkspace,fmcsR,弗雷泽,frma,GA4GHclient,GA4GHshiny,gcapc,genbankr,geneAttribution,geneClassifiers,genefilter,《创世纪》,GenomicAlignments,GenomicInteractions,GenomicTuples,genotypeeval,GenVisR,GeomxTools,GeoMxWorkflows,glmGamPoi,gmapR,gmoviz,goseq,哥特,gpuMagic,Gviz,HDF5Array,的热图,爱马仕,希尔达,hiReadsProcessor,hopach,HTSeqGenie,icetea,igvR,IHW,IHWpaper,ima,infercnv,检查,InTAD,intansv,InteractionSet,感兴趣,电离,iSEE,IsoformSwitchAnalyzeR,isomiRs,iva,KCsmart,KEGGandMetacoreDzPathwaysGEO,KEGGdzPathwaysGEO,ldblock,LinTInd,lisaClust,萝拉,微波激射器,桅杆,,,meshr,MetaboAnnotation,metaMS,metaseqR2,methInheritSim,MethylAid,methylPipe,methylumi,米娅,miaViz,microbiomeDataSets,microbiomeMarker,miloR,mimager,MinimumDistance,米拉,海市蜃楼,missMethyl,MMAPPR2,Modstrings,mogsa,蒙娜丽莎,单片眼镜,Motif2Site,motifbreakR,MouseGastrulationData,MouseThymusAgeing,msa,MSnID,MultiAssayExperiment,multicrispr,MultiDataSet,multiMiR,mumosa,MutationalPatterns,mzR,NanoStringNCTools,ncdfFlow,nearBynding,npGSEA,诊断,NxtIRFcore,奥得河,oligoClasses,OmicsLonDA,openCyto,openPrimeR,ORFik,先驱者,parglms,pcaMethods,PDATK,pdInfoBuilder,PharmacoGx,phemd,PhIPData,PhosR,phyloseq,π,钢琴,,podkat,婴儿车,primirTSS,proDA,profileScoreDist,pRoloc,pRolocGUI,ProteoDisco,PSMatch,PureCN,pwOmics,QFeatures,qPLEXanalyzer,qsea,QuasR,R3CPET,R453Plus1Toolbox,RadioGx,RaggedExperiment,ramr,ramwas,美国广播公司,RcisTarget,RCy3,RCyjs,收回,REMP,ReportingTools,RGMQL,RGSEA,RiboCrypt,RiboDiPA,RiboProfiling,ribosomeProfilingQC,林格,RJMCMCNucleosomes,rnaEditr,RNAmodR,RNAmodR.AlkAnilineSeq,RNAmodR.ML,RNAmodR.RiboMethSeq,咆哮,的方式,Rqc,rqubic,Rsamtools,rsbml,rScudo,RTCGAToolbox,rtracklayer,SC3,SCArray,,scDblFinder,scmap,SCnorm,范围,scPipe,食物,scRNAseq,颈背,天窗,SeqVarTools,sevenC,SGSeq,SharedObject,signatureSearch,签名者,,SingleCellExperiment,SingleCellMultiModal,SingleMoleculeFootprinting,sitadela,SLGI,SNPhood,SNPlocs.Hsapiens.dbSNP144.GRCh37,SNPlocs.Hsapiens.dbSNP144.GRCh38,SNPlocs.Hsapiens.dbSNP149.GRCh38,SNPlocs.Hsapiens.dbSNP150.GRCh38,SNPlocs.Hsapiens.dbSNP151.GRCh38,SNPlocs.Hsapiens.dbSNP155.GRCh38,snpStats,麻雀,SpatialExperiment,spatialLIBD,spatzie,光谱,spicyR,飞溅,SplicingGraphs,SQLDataFrame,sRACIPE,sscu,斯坦,standR,strandCheckR,拖缆,Structstrings,SummarizedExperiment,SynMut,systemPipeR,systemPipeRdata,TAPseq,目标,TarSeqQC,TBSignatureProfiler,TCGAutils,TCseq,TENxBUSData,TFBSTools,TitanCNA,ToxicoGx,trackViewer,transcriptR,石棉水泥板,TransView,TreeSummarizedExperiment,tRNA,tRNAdbImport,tRNAscanImport,TSRchitect,TVTB,txcutr,Ularcirc,UMI4Cats,unifiedWMWqPCR,universalmotif,的作用,VariantTools,VariantToolsData,伶盗龙,wavClusteR,weitrix,xcms,XDE,XtraSNPlocs.Hsapiens.dbSNP144.GRCh37,XtraSNPlocs.Hsapiens.dbSNP144.GRCh38,XVector
建议我 acde,aggregateBioVar,的目标是,资产,ASURAT,BaalChIP,baySeq,BDMMAcorrect,bigmelon,bigPint,BiocCheck,BiocParallel,BiocStyle,biocViews,BioMM,biosigner,BiRewire,BLMA,BloodGen3Module,bnem,北欧化工,BUScorrect,BUSseq,咖啡馆,相机,CancerSubtypes,萤石,CausalR,ccrepe,cellmigRation,CellNOptR,CexoR,ChIPanalyser,ChIPXpress,CHRONOS,CINdex,cleanUpdTSeq,限幅器,clonotypeR,clustComp,CNORfeeder,CNORfuzzy,coexnet,彗星,ConnectivityMap,共识,cosmiq,COSNet,cpvSNP,CytoTree,DEsubs,DExMA,DMRcaller,DMRcate,ENCODExplorerData,EnhancedVolcano,ENmix,epiNEM,EventPointer,fCCAC,fcScan,fgga,FGNet,FieldEffectCrc,flowCL,flowCut,flowTime,核磁共振,GateFinder,gCrisprTools,gdsfmt,宝石,GeneNetworkBuilder,GeneOverlap,geneplast,geneplast.data,geneRxCluster,geNetClassifier,genomation,GEOquery,GMRP,GOstats,GraphPAC,GreyListChIP,grndata,GSVA,GWASTools,h5vc,哈曼,HarmanData,healthyControlsPresenceChecker,hiAnnotator,HiCDCPlus,hierGWAS,HIREewas,HPiP,超图,iCARE,iClusterPlus,illuminaio,immunotation,InPAS,INPower,首次公开募股,烤肉串,KEGGREST,花边,MAGAR,mAPKL,massiR,MatrixQCvis,MatrixRider,mbt,mCSEA,Mergeomics,金属底座,MetaboSignal,metagene,metagene2,metagenomeSeq,MetCirc,methylCC,methylInheritance,MetNet,微生物组,microRNAome,MIGSAdata,miRBaseConverter,miRcomp,mirIntegrator,miRLAB,mnem,mosbi,motifStack,multiClust,MultiMed,multiOmicsViz,MungeSumstats,MWASTools,NBSplice,ncRNAtools,nempi,netbiov,NetSAM,nondetects,NoRCE,nucleoSim,OMICsPCA,OncoScore,PAA,panelcn.mops,Path2PPI,PathNet,pathview,PCAtools,pepXMLTab,PhenStat,powerTCR,proBAMr,proFIA,pwrEWAS,pwrEWAS.data,qpgraph,quantro,QuartPAC,RBGL,rBiopaxParser,Rcade,rcellminer,rCGH,Rcpi,REBET,RegParallel,rfaRm,RGraph2js,Rgraphviz,rgsepd,riboSeqR,ROntoTools,ropls,ROSeq,研制,RTNduals,RTNsurvival,rTRM,SAIGEgds,sangerseqR,圣诞老人,衬衣,scDataviz,scmeth,用水晶球占卜,segmentSeq,SeqArray,seqPattern,seqTools,sesameData,SICtools,sigFeature,sigsquared,SIMAT,similaRpeak,SIMLR,singleCellTK,,弹弓,SNPRelate,寄居,SpacePAC,sparseDOSSA,SparseSignatures,spatialHeatmap,specL,STATegRa,STRINGdb,systemPipeTools,移行细胞癌,TFEA.ChIP,,transcriptogramer,TraRe,tra利用,TreeAndLeaf,trena,tripr,TRONCO,Uniquorn,variancePartition,左页,xcore,xcoredata
我的链接
构建报告

包档案

遵循bob 体育网址 指示在R会话中使用这个包。

源包 BiocGenerics_0.42.0.tar.gz
Windows二进制 BiocGenerics_0.42.0.zip
macOS二进制(x86_64) BiocGenerics_0.42.0.tgz
源库 git克隆https://git.bioconductor.org/packages/BiocGenerics
源库(开发人员访问) git克隆git@git.bioconductor.org:包/ BiocGenerics
包短Url //www.anjoumacpherson.com/packages/BiocGenerics/
包下载报告 下载数据

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