Biobase

DOI:10.18129 / B9.bioc.Biobase

这个包是3.15版本Bioconductor;的稳定,最新的发布版本,请参阅Biobase

Bioconductor Biobase:基函数

Bioconductor版本:3.15

函数所需的许多其他包或取代R功能。

作者:r .绅士,诉凯利·m·摩根,美国鹰

维修工:Bioconductor包维护者<维护者bioconductor.org >

从内部引用(R,回车引用(“Biobase”)):

安装

安装这个包,开始R(版本“4.2”)并输入:

如果(!要求(“BiocManager”,悄悄地= TRUE)) install.packages (“BiocManager”) BiocManager::安装(“Biobase”)

R的旧版本,请参考适当的Bioconductor释放

文档

查看文档的版本这个包安装在您的系统,开始R和输入:

browseVignettes (“Biobase”)

PDF R脚本 介绍Biobase ExpressionSets
PDF R脚本 esApply介绍
PDF R脚本 笔记eSet开发者bob电竞体育官网
PDF 参考手册
文本 新闻

细节

biocViews 基础设施,软件
版本 2.56.0
Bioconductor自 BioC 1.6 (r - 2.1)或更早(> 17.5年)
许可证 艺术- 2.0
取决于 R (> = 2.10),BiocGenerics(> = 0.27.1),跑龙套
进口 方法
链接
建议 工具,tkWidgets,所有,RUnit,golubEsets
SystemRequirements
增强了
URL //www.anjoumacpherson.com/packages/Biobase
BugReports https://github.com/Bioconductor/Biobase/issues
取决于我 ACME,affy,affycomp,affycompData,affyContam,affycoretools,affyPLM,AGDEX,AgiMicroRna,的目标是,所有,altcdfenvs,annaffy,AnnotationDbi,AnnotationForge,antiProfilesData,ArrayExpress,arrayMvout,自动调谐,,bandle,bcellViper,beadarray,beadarrayExampleData,beadarraySNP,bgx,BicARE,bigmelon,bioDist,BioMVCClass,BioQC,bladderbatch,BLMA,北欧化工,brgedata,相机,cancerclass,cancerdata,卡斯珀,类别,categoryCompare,亚兰,CCPROMISE,cellHTS2,CGHbase,CGHcall,CGHregions,clippda,慢性淋巴细胞白血病,clusterStab,CMA,cn.farms,codelink,colonCA,转换,国王杯,covEB,covRNA,CRCL18,curatedBreastData,davidTiling,DEXSeq,DFP,diggit,diggitdata,DLBCL,doppelgangR,dressCheck,DSS,dyebias,EBarrays,EDASeq,边缘,EGSEA,epigenomix,epivizrData,etec16s,EuPathDB,ExiMiR,ExpressionAtlas,fabia。,fabiaData,factDesign,fastseg,fibroEset,flowBeads,frma,gaga,gaschYHS,GeneMeta,geneplotter,geneRecommender,GeneRegionScan,GeneSelectMMD,geNetClassifier,GeoDiff,GEOexplorer,GeomxTools,GEOquery,GOexpress,golubEsets,goProfiles,GOstats,GSE103322,GSE13015,GSE62944,GSEABase,GSEABenchmarkeR,GSEAlm,GSVAdata,GWASTools,hapFabia,harbChIP,帮助,Hiiragi2013,hopach,HTqPCR,HumanAffyData,humanStemCell,HybridMTest,iBMQ,iCheck,IdeoViz,染色体组型,检查,等压线,iterativeBMA,iva,Iyer517,kidpack,leeBamViews,leukemiasEset,光民,lumiBarnes,lungExpression,macat,made4,maEndToEnd,mAPKL,MAQCsubset,MAQCsubsetILM,massiR,,metabomxtr,metagenomeSeq,MetaGxBreast,MetaGxOvarian,metavizr,MethPed,methylumi,Mfuzz,MiChip,microbiomeExplorer,mimager,含羞草,MineICA,海市蜃楼,miRcomp,miRNATarget,MLInterfaces,MMDiff2,单片眼镜,msd16s,MSnbase,Mulcom,MultiDataSet,,mvoutData,NanoStringDiff,NanoStringNCTools,纳米管,Neve2006,NOISeq,nondetects,normalize450K,NormqPCR,益生元,omicRexposome,OrderedList,OTUbase,PADOG,pandaR,panp,pcaMethods,pdInfoBuilder,pepStat,phenoTest,PLPE,POWSC,PREDA,PREDAsampledata,ProData,pRolocGUI,承诺,prostateCancerCamcap,prostateCancerGrasso,prostateCancerStockholm,prostateCancerTaylor,prostateCancerVarambally,pumadata,qpcrNorm,qPLEXanalyzer,R453Plus1Toolbox,RbcBook1,rbsurv,rcellminer,rcellminerData,ReadqPCR,RefPlus,rexposome,林格,Risa,Rmagpie,Rnits,RTCA,RTopper,RUVnormalizeData,RUVSeq,安全,SCAN.UPC,SeqGSEA,SigCheck,siggenes,singleCellTK,SpeCond,SPEM,SpikeInSubset,spkTools,splineTimeR,STROMA4,SummarizedExperiment,TCGAcrcmiRNA,TCGAcrcmRNA,TDARACNE,tigre,tilingArray,topGO,泛太平洋伙伴关系,tRanslatome,tspair,tweeDEseqCountData,《暮光之城》,撤销,VegaMC,毒蛇,vsn,西瓜,webbioc,XDE,,yeastCC
进口我 a4Base,a4Classif,a4Core,a4Preproc,ABarray,王牌,aCGH,adSplit,affyILM,AgiMicroRna,曾帮工,annmap,注释,AnnotationHubData,annotationTools,ArrayExpressHTS,arrayQualityMetrics,吸引,舞会礼服,基础知识,BayesKnockdown,BgeeDB,biobroom,bioCancer,biocViews,生命网络,biosigner,biscuiteer,BiSeq,blima,BloodCancerMultiOmics2017,bnem,bsseq,BubbleTree,咖啡馆,癌症,红衣主教,ccTutorial,CellScore,CellTrails,CGHnormaliter,ChIPQC,ChIPXpress,ChromHeatMap,chromswitch,西塞罗,限幅器,CluMSID,cn.mops,可可,coexnet,cogena,结合,CompoundDb,conclus,ConsensusClusterPlus,consensusDE,consensusOV,警戒线,CoreGx,crlmm,crossmeta,ctgGEM,腰带,cyanoFilter,周期,cydar,CytoML,CytoTree,DAPAR,ddCt,debCAM,德科,DEGreport,DESeq2,DeSousa2013,命运,DExMA,DExMAdata,diffloop,不和谐的,easyRNASeq,EBarrays,ecolitk,天哪,ENmix,ensembldb,erma,esetVis,ExiMiR,ExpHunterSuite,ExpressionNormalizationWorkflow,农场,ffpe,Fletcher2013a,flowClust,flowCore,flowFP,flowMatch,flowMeans,flowSpecs,flowStats,flowUtils,flowViz,flowWorkspace,弗雷泽,frma,frmaTools,GAPGOM,gCrisprTools,gcrma,GCSscore,genbankr,geneClassifiers,GeneExpressionSignature,genefilter,GeneMeta,geneRecommender,GeneRegionScan,《创世纪》,GenomicFeatures,GenomicInteractions,GenomicScores,GenomicSuperSignature,GeoMxWorkflows,GEOsubmission,gep2pep,gespeR,ggbio,girafe,GISPA,GlobalAncova,globaltest,gmapR,GSE13015,GSRI,GSVA,Gviz,Harshlight,哼哼,爱马仕,hgu133plus2CellScore,HTqPCR,HTSFilter,IHWpaper,imageHTS,ImmuneSpaceR,infinityFlow,InPAS,InTAD,IsoformSwitchAnalyzeR,IsoGeneGUI,isomiRs,iterClust,KEGGandMetacoreDzPathwaysGEO,KEGGdzPathwaysGEO,kissDE,lapmix,LiquidAssociation,LRBaseDbi,maanova,MAGeCKFlute,makecdfenv,maSigPro,桅杆,mBPCR,mcsurvdata,MeSHDbi,metaseqR2,MethylAid,methylCC,methylclock,methylumi,mfa,MiChip,microbiomeDASim,microbiomeMarker,MIGSA,minfi,MinimumDistance,MiPP,米拉,miRSM,missMethyl,MLSeq,MMAPPR2,mogsa,MoonlightR,MOSim,MSnID,MultiAssayExperiment,多屏幕,mzR,NanoStringQCPro,ncdfFlow,netZooR,NormalyzerDE,npGSEA,诊断,oligoClasses,omicade4,omicsViewer,ontoProc,openCyto,oposSOM,oppar,OrganismDbi,panp,phantasus,PharmacoGx,phemd,phyloseq,钢琴,plethy,plgem,钳子,podkat,ppiStats,prebs,王子,proBatch,proFIA,后代,pRoloc,pRolocdata,承诺,道具,ProteomicsAnnotationHubData,protGear,PSEA,psygenet2r,ptairMS,彪马,PureCN,pvac,pvca,pwOmics,qcmetrics,QDNAseq,QFeatures,qpgraph,quantiseqr,quantro,QuasR,qusage,RadioGx,randPack,ReportingTools,restfulSE,,Rmagpie,RMassBank,RNAinteract,RNAinteractMAPK,的方式,ropls,腐烂,RpsiXML,rqubic,rScudo,Rtpca,Rtreemix,RUVnormalize,scmap,scTGIF,seqc,SeqVarTools,ShortRead,signatureSearchData,SigsPack,sigsquared,SimBindProfiles,singscore,sitadela,SLGI,击杀,SomaticSignatures,SpatialDecon,spkTools,海绵,standR,STATegRa,subSeq,synapter,TEQC,TFBSTools,timecourse,TMixClust,三硝基甲苯,topdownr,ToxicoGx,tradeSeq,traviz,TTMap,《暮光之城》,的作用,VanillaICE,variancePartition,VariantAnnotation,VariantFiltering,VariantTools,vidger,火神,西瓜,个字,xcms,Xeva
建议我 AUCell,BiocCheck,BiocGenerics,BiocOncoTK,biotmleData,breastCancerMAINZ,breastCancerNKI,breastCancerTRANSBIG,breastCancerUNT,breastCancerUPP,breastCancerVDX,BSgenome,ccTutorial,CellMapper,cellTree,clustComp,coseq,CountClust,飞镖,dcanr,dearseq,多萝西娅,dyebiasexamples,刨边机,EnMCB,EpiDISH,epivizr,epivizrChart,epivizrStandalone,农场,genefu,GENIE3,GenomicRanges,GSAR,GSgalgoR,Heatplus,HMP16SData,HMP2Data,interactiveDisplay,烤肉串,莱斯,limma,M3Drop,mammaPrintData,mAPKLData,mCSEA,墨西拿,msa,multiClust,OSAT,PCAtools,pkgDepTools,RcisTarget,ReactomeGSA,RegParallel,rheumaticConditionWOLLBOLD,中华民国,RTCGA,,scmeth,食物,SeqArray,seventyGeneData,麻雀,spatialHeatmap,经验丰富的人,survcomp,TargetScore,TCGAbiolinks,TFutils,TimeSeriesExperiment,tkWidgets,TypeInfo,vbmp,widgetTools,yeastExpData,yeastRNASeq
我的链接
构建报告

包档案

遵循bob 体育网址 指示在R会话中使用这个包。

源包 Biobase_2.56.0.tar.gz
Windows二进制 Biobase_2.56.0.zip(64位)
macOS二进制(x86_64) Biobase_2.56.0.tgz
源库 git克隆https://git.bioconductor.org/packages/Biobase
源库(开发人员访问) git克隆git@git.bioconductor.org:包/ Biobase
包短Url //www.anjoumacpherson.com/packages/Biobase/
包下载报告 下载数据

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