| biocViews |
注释,DataRepresentation,遗传学,基础设施,单核苷酸多态性,SequenceMatching,软件 |
| 版本 |
1.64.0 |
| Bioconductor自 |
BioC 1.9 (r - 2.4)(16岁) |
| 许可证 |
艺术- 2.0 |
| 取决于 |
R(> = 2.8.0)、方法BiocGenerics(> = 0.13.8),S4Vectors(> = 0.17.28),IRanges(> = 2.13.16),GenomeInfoDb(> = 1.25.6),GenomicRanges(> = 1.31.10),Biostrings(> = 2.47.6),rtracklayer(> = 1.39.7) |
| 进口 |
方法,跑龙套,统计数据,matrixStats,BiocGenerics,S4Vectors,IRanges,XVector(> = 0.29.3),GenomeInfoDb,GenomicRanges,Biostrings,Rsamtools,rtracklayer |
| 链接 |
|
| 建议 |
BiocManager,Biobase,BSgenome.Celegans.UCSC.ce2,BSgenome.Hsapiens.UCSC.hg38,BSgenome.Hsapiens.UCSC.hg38.masked,BSgenome.Mmusculus.UCSC.mm10,BSgenome.Rnorvegicus.UCSC.rn5,BSgenome.Scerevisiae.UCSC.sacCer1,BSgenome.Hsapiens.NCBI.GRCh38,TxDb.Hsapiens.UCSC.hg38.knownGene,TxDb.Mmusculus.UCSC.mm10.knownGene,SNPlocs.Hsapiens.dbSNP144.GRCh38,XtraSNPlocs.Hsapiens.dbSNP144.GRCh38,hgu95av2probe,RUnit |
| SystemRequirements |
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| 增强了 |
|
| URL |
//www.anjoumacpherson.com/packages/BSgenome |
| BugReports |
https://github.com/Bioconductor/BSgenome/issues |
| 取决于我 |
注释,bambu,BSgenome.Alyrata.JGI.v1,BSgenome.Amellifera.BeeBase.assembly4,BSgenome.Amellifera.NCBI.AmelHAv3.1,BSgenome.Amellifera.UCSC.apiMel2,BSgenome.Amellifera.UCSC.apiMel2.masked,BSgenome.Aofficinalis.NCBI.V1,BSgenome.Athaliana.TAIR.04232008,BSgenome.Athaliana.TAIR.TAIR9,BSgenome.Btaurus.UCSC.bosTau3,BSgenome.Btaurus.UCSC.bosTau3.masked,BSgenome.Btaurus.UCSC.bosTau4,BSgenome.Btaurus.UCSC.bosTau4.masked,BSgenome.Btaurus.UCSC.bosTau6,BSgenome.Btaurus.UCSC.bosTau6.masked,BSgenome.Btaurus.UCSC.bosTau8,BSgenome.Btaurus.UCSC.bosTau9,BSgenome.Btaurus.UCSC.bosTau9.masked,BSgenome.Carietinum.NCBI.v1,BSgenome.Celegans.UCSC.ce10,BSgenome.Celegans.UCSC.ce11,BSgenome.Celegans.UCSC.ce2,BSgenome.Celegans.UCSC.ce6,BSgenome.Cfamiliaris.UCSC.canFam2,BSgenome.Cfamiliaris.UCSC.canFam2.masked,BSgenome.Cfamiliaris.UCSC.canFam3,BSgenome.Cfamiliaris.UCSC.canFam3.masked,BSgenome.Cjacchus.UCSC.calJac3,BSgenome.Cjacchus.UCSC.calJac4,BSgenome.CneoformansVarGrubiiKN99.NCBI.ASM221672v1,BSgenome.Creinhardtii.JGI.v5.6,BSgenome.Dmelanogaster.UCSC.dm2,BSgenome.Dmelanogaster.UCSC.dm2.masked,BSgenome.Dmelanogaster.UCSC.dm3,BSgenome.Dmelanogaster.UCSC.dm3.masked,BSgenome.Dmelanogaster.UCSC.dm6,BSgenome.Drerio.UCSC.danRer10,BSgenome.Drerio.UCSC.danRer11,BSgenome.Drerio.UCSC.danRer5,BSgenome.Drerio.UCSC.danRer5.masked,BSgenome.Drerio.UCSC.danRer6,BSgenome.Drerio.UCSC.danRer6.masked,BSgenome.Drerio.UCSC.danRer7,BSgenome.Drerio.UCSC.danRer7.masked,BSgenome.Dvirilis.Ensembl.dvircaf1,BSgenome.Ecoli.NCBI.20080805,BSgenome.Gaculeatus.UCSC.gasAcu1,BSgenome.Gaculeatus.UCSC.gasAcu1.masked,BSgenome.Ggallus.UCSC.galGal3,BSgenome.Ggallus.UCSC.galGal3.masked,BSgenome.Ggallus.UCSC.galGal4,BSgenome.Ggallus.UCSC.galGal4.masked,BSgenome.Ggallus.UCSC.galGal5,BSgenome.Ggallus.UCSC.galGal6,BSgenome.Gmax.NCBI.Gmv40,BSgenome.Hsapiens.1000genomes.hs37d5,BSgenome.Hsapiens.NCBI.GRCh38,BSgenome.Hsapiens.NCBI.T2T.CHM13v2.0,BSgenome.Hsapiens.UCSC.hg17,BSgenome.Hsapiens.UCSC.hg17.masked,BSgenome.Hsapiens.UCSC.hg18,BSgenome.Hsapiens.UCSC.hg18.masked,BSgenome.Hsapiens.UCSC.hg19,BSgenome.Hsapiens.UCSC.hg19.masked,BSgenome.Hsapiens.UCSC.hg38,BSgenome.Hsapiens.UCSC.hg38.dbSNP151.major,BSgenome.Hsapiens.UCSC.hg38.dbSNP151.minor,BSgenome.Hsapiens.UCSC.hg38.masked,BSgenome.Mdomestica.UCSC.monDom5,BSgenome.Mfascicularis.NCBI.5.0,BSgenome.Mfascicularis.NCBI.6.0,BSgenome.Mfuro.UCSC.musFur1,BSgenome.Mmulatta.UCSC.rheMac10,BSgenome.Mmulatta.UCSC.rheMac2,BSgenome.Mmulatta.UCSC.rheMac2.masked,BSgenome.Mmulatta.UCSC.rheMac3,BSgenome.Mmulatta.UCSC.rheMac3.masked,BSgenome.Mmulatta.UCSC.rheMac8,BSgenome.Mmusculus.UCSC.mm10,BSgenome.Mmusculus.UCSC.mm10.masked,BSgenome.Mmusculus.UCSC.mm39,BSgenome.Mmusculus.UCSC.mm8,BSgenome.Mmusculus.UCSC.mm8.masked,BSgenome.Mmusculus.UCSC.mm9,BSgenome.Mmusculus.UCSC.mm9.masked,BSgenome.Osativa.MSU.MSU7,BSgenome.Ppaniscus.UCSC.panPan1,BSgenome.Ppaniscus.UCSC.panPan2,BSgenome.Ptroglodytes.UCSC.panTro2,BSgenome.Ptroglodytes.UCSC.panTro2.masked,BSgenome.Ptroglodytes.UCSC.panTro3,BSgenome.Ptroglodytes.UCSC.panTro3.masked,BSgenome.Ptroglodytes.UCSC.panTro5,BSgenome.Ptroglodytes.UCSC.panTro6,BSgenome.Rnorvegicus.UCSC.rn4,BSgenome.Rnorvegicus.UCSC.rn4.masked,BSgenome.Rnorvegicus.UCSC.rn5,BSgenome.Rnorvegicus.UCSC.rn5.masked,BSgenome.Rnorvegicus.UCSC.rn6,BSgenome.Rnorvegicus.UCSC.rn7,BSgenome.Scerevisiae.UCSC.sacCer1,BSgenome.Scerevisiae.UCSC.sacCer2,BSgenome.Scerevisiae.UCSC.sacCer3,BSgenome.Sscrofa.UCSC.susScr11,BSgenome.Sscrofa.UCSC.susScr3,BSgenome.Sscrofa.UCSC.susScr3.masked,BSgenome.Tgondii.ToxoDB.7.0,BSgenome.Tguttata.UCSC.taeGut1,BSgenome.Tguttata.UCSC.taeGut1.masked,BSgenome.Tguttata.UCSC.taeGut2,BSgenome.Vvinifera.URGI.IGGP12Xv0,BSgenome.Vvinifera.URGI.IGGP12Xv2,BSgenome.Vvinifera.URGI.IGGP8X,ChIPanalyser,哥特,HelloRanges,leeBamViews,MEDIPS,periodicDNA,REDseq,rGADEM,SNPlocs.Hsapiens.dbSNP.20120608,SNPlocs.Hsapiens.dbSNP141.GRCh38,SNPlocs.Hsapiens.dbSNP142.GRCh37,SNPlocs.Hsapiens.dbSNP144.GRCh37,SNPlocs.Hsapiens.dbSNP144.GRCh38,SNPlocs.Hsapiens.dbSNP149.GRCh38,SNPlocs.Hsapiens.dbSNP150.GRCh38,SNPlocs.Hsapiens.dbSNP151.GRCh38,SNPlocs.Hsapiens.dbSNP155.GRCh38,VarCon,XtraSNPlocs.Hsapiens.dbSNP141.GRCh38,XtraSNPlocs.Hsapiens.dbSNP144.GRCh37,XtraSNPlocs.Hsapiens.dbSNP144.GRCh38 |
| 进口我 |
AllelicImbalance,appreci8R,ATACseqQC,atSNP,击败,BSgenome.Alyrata.JGI.v1,BSgenome.Amellifera.BeeBase.assembly4,BSgenome.Amellifera.NCBI.AmelHAv3.1,BSgenome.Amellifera.UCSC.apiMel2,BSgenome.Amellifera.UCSC.apiMel2.masked,BSgenome.Aofficinalis.NCBI.V1,BSgenome.Athaliana.TAIR.04232008,BSgenome.Athaliana.TAIR.TAIR9,BSgenome.Btaurus.UCSC.bosTau3,BSgenome.Btaurus.UCSC.bosTau3.masked,BSgenome.Btaurus.UCSC.bosTau4,BSgenome.Btaurus.UCSC.bosTau4.masked,BSgenome.Btaurus.UCSC.bosTau6,BSgenome.Btaurus.UCSC.bosTau6.masked,BSgenome.Btaurus.UCSC.bosTau8,BSgenome.Btaurus.UCSC.bosTau9,BSgenome.Btaurus.UCSC.bosTau9.masked,BSgenome.Carietinum.NCBI.v1,BSgenome.Celegans.UCSC.ce10,BSgenome.Celegans.UCSC.ce11,BSgenome.Celegans.UCSC.ce2,BSgenome.Celegans.UCSC.ce6,BSgenome.Cfamiliaris.UCSC.canFam2,BSgenome.Cfamiliaris.UCSC.canFam2.masked,BSgenome.Cfamiliaris.UCSC.canFam3,BSgenome.Cfamiliaris.UCSC.canFam3.masked,BSgenome.Cjacchus.UCSC.calJac3,BSgenome.Cjacchus.UCSC.calJac4,BSgenome.CneoformansVarGrubiiKN99.NCBI.ASM221672v1,BSgenome.Creinhardtii.JGI.v5.6,BSgenome.Dmelanogaster.UCSC.dm2,BSgenome.Dmelanogaster.UCSC.dm2.masked,BSgenome.Dmelanogaster.UCSC.dm3,BSgenome.Dmelanogaster.UCSC.dm3.masked,BSgenome.Dmelanogaster.UCSC.dm6,BSgenome.Drerio.UCSC.danRer10,BSgenome.Drerio.UCSC.danRer11,BSgenome.Drerio.UCSC.danRer5,BSgenome.Drerio.UCSC.danRer5.masked,BSgenome.Drerio.UCSC.danRer6,BSgenome.Drerio.UCSC.danRer6.masked,BSgenome.Drerio.UCSC.danRer7,BSgenome.Drerio.UCSC.danRer7.masked,BSgenome.Dvirilis.Ensembl.dvircaf1,BSgenome.Ecoli.NCBI.20080805,BSgenome.Gaculeatus.UCSC.gasAcu1,BSgenome.Gaculeatus.UCSC.gasAcu1.masked,BSgenome.Ggallus.UCSC.galGal3,BSgenome.Ggallus.UCSC.galGal3.masked,BSgenome.Ggallus.UCSC.galGal4,BSgenome.Ggallus.UCSC.galGal4.masked,BSgenome.Ggallus.UCSC.galGal5,BSgenome.Ggallus.UCSC.galGal6,BSgenome.Gmax.NCBI.Gmv40,BSgenome.Hsapiens.NCBI.GRCh38,BSgenome.Hsapiens.NCBI.T2T.CHM13v2.0,BSgenome.Hsapiens.UCSC.hg17,BSgenome.Hsapiens.UCSC.hg17.masked,BSgenome.Hsapiens.UCSC.hg18,BSgenome.Hsapiens.UCSC.hg18.masked,BSgenome.Hsapiens.UCSC.hg19,BSgenome.Hsapiens.UCSC.hg19.masked,BSgenome.Hsapiens.UCSC.hg38,BSgenome.Hsapiens.UCSC.hg38.masked,BSgenome.Mdomestica.UCSC.monDom5,BSgenome.Mfascicularis.NCBI.5.0,BSgenome.Mfascicularis.NCBI.6.0,BSgenome.Mfuro.UCSC.musFur1,BSgenome.Mmulatta.UCSC.rheMac10,BSgenome.Mmulatta.UCSC.rheMac2,BSgenome.Mmulatta.UCSC.rheMac2.masked,BSgenome.Mmulatta.UCSC.rheMac3,BSgenome.Mmulatta.UCSC.rheMac3.masked,BSgenome.Mmulatta.UCSC.rheMac8,BSgenome.Mmusculus.UCSC.mm10,BSgenome.Mmusculus.UCSC.mm10.masked,BSgenome.Mmusculus.UCSC.mm39,BSgenome.Mmusculus.UCSC.mm8,BSgenome.Mmusculus.UCSC.mm8.masked,BSgenome.Mmusculus.UCSC.mm9,BSgenome.Mmusculus.UCSC.mm9.masked,BSgenome.Osativa.MSU.MSU7,BSgenome.Ppaniscus.UCSC.panPan1,BSgenome.Ppaniscus.UCSC.panPan2,BSgenome.Ptroglodytes.UCSC.panTro2,BSgenome.Ptroglodytes.UCSC.panTro2.masked,BSgenome.Ptroglodytes.UCSC.panTro3,BSgenome.Ptroglodytes.UCSC.panTro3.masked,BSgenome.Ptroglodytes.UCSC.panTro5,BSgenome.Ptroglodytes.UCSC.panTro6,BSgenome.Rnorvegicus.UCSC.rn4,BSgenome.Rnorvegicus.UCSC.rn4.masked,BSgenome.Rnorvegicus.UCSC.rn5,BSgenome.Rnorvegicus.UCSC.rn5.masked,BSgenome.Rnorvegicus.UCSC.rn6,BSgenome.Rnorvegicus.UCSC.rn7,BSgenome.Scerevisiae.UCSC.sacCer1,BSgenome.Scerevisiae.UCSC.sacCer2,BSgenome.Scerevisiae.UCSC.sacCer3,BSgenome.Sscrofa.UCSC.susScr11,BSgenome.Sscrofa.UCSC.susScr3,BSgenome.Sscrofa.UCSC.susScr3.masked,BSgenome.Tgondii.ToxoDB.7.0,BSgenome.Tguttata.UCSC.taeGut1,BSgenome.Tguttata.UCSC.taeGut1.masked,BSgenome.Tguttata.UCSC.taeGut2,BSgenome.Vvinifera.URGI.IGGP12Xv0,BSgenome.Vvinifera.URGI.IGGP12Xv2,BSgenome.Vvinifera.URGI.IGGP8X,bsseq,BUSpaRse,篮球选手,chromVAR,circRNAprofiler,cleanUpdTSeq,cliProfiler,crisprBowtie,crisprBwa,CRISPRseek,crisprseekplus,diffHic,dpeak,enhancerHomologSearch,enrichTF,esATAC,EventPointer,exomePeak2,fitCons.UCSC.hg19,弗雷泽,gcapc,genomation,GenomicDistributionsData,GenVisR,ggbio,gmapR,GreyListChIP,GUIDEseq,Gviz,hiAnnotator,HiCDCPlus,InPAS,IsoformSwitchAnalyzeR,m6Aboost,MADSEQ,MafDb.1Kgenomes.phase1.GRCh38,MafDb.1Kgenomes.phase1.hs37d5,MafDb.1Kgenomes.phase3.GRCh38,MafDb.1Kgenomes.phase3.hs37d5,MafDb.ExAC.r1.0.GRCh38,MafDb.ExAC.r1.0.hs37d5,MafDb.ExAC.r1.0.nonTCGA.GRCh38,MafDb.ExAC.r1.0.nonTCGA.hs37d5,MafDb.gnomAD.r2.1.GRCh38,MafDb.gnomAD.r2.1.hs37d5,MafDb.gnomADex.r2.1.GRCh38,MafDb.gnomADex.r2.1.hs37d5,MafDb.TOPMed.freeze5.hg19,MafDb.TOPMed.freeze5.hg38,MafH5.gnomAD.v3.1.1.GRCh38,MafH5.gnomAD.v3.1.2.GRCh38,methrix,MethylSeekR,MMDiff2,蒙娜丽莎,Motif2Site,motifbreakR,motifmatchr,msgbsR,multicrispr,MungeSumstats,musicatk,MutationalPatterns,NxtIRFcore,ORFik,phastCons100way.UCSC.hg19,phastCons100way.UCSC.hg38,phastCons7way.UCSC.hg38,平,pipeFrame,podkat,qsea,QuasR,R453Plus1Toolbox,RareVariantVis,美国广播公司,地区,REMP,Repitools,ribosomeProfilingQC,RNAmodR,scmeth,范围,SigsPack,SingleMoleculeFootprinting,SNPlocs.Hsapiens.dbSNP.20120608,SNPlocs.Hsapiens.dbSNP141.GRCh38,SNPlocs.Hsapiens.dbSNP142.GRCh37,SNPlocs.Hsapiens.dbSNP144.GRCh37,SNPlocs.Hsapiens.dbSNP144.GRCh38,SNPlocs.Hsapiens.dbSNP149.GRCh38,SNPlocs.Hsapiens.dbSNP150.GRCh38,SNPlocs.Hsapiens.dbSNP151.GRCh38,SNPlocs.Hsapiens.dbSNP155.GRCh38,SparseSignatures,spatzie,的,TAPseq,TFBSTools,trena,tRNAscanImport,Ularcirc,UMI4Cats,VariantAnnotation,VariantFiltering,VariantTools,XNAString,XtraSNPlocs.Hsapiens.dbSNP141.GRCh38,XtraSNPlocs.Hsapiens.dbSNP144.GRCh37,XtraSNPlocs.Hsapiens.dbSNP144.GRCh38 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| 建议我 |
Biostrings,biovizBase,ChIPpeakAnno,chipseq,easyRNASeq,eisaR,GeneRegionScan,GenomeInfoDb,GenomicAlignments,GenomicFeatures,GenomicRanges,maftools,metaseqR2,海市蜃楼,plotgardener,ProteoDisco,PWMEnrich,QDNAseq,收回,RiboCrypt,rtracklayer,sitadela,SNPlocs.Hsapiens.dbSNP.20101109 |
| 我的链接 |
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| 构建报告 |
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