S4Vectors

DOI:10.18129 / B9.bioc.S4Vectors

这个包是3.14版本Bioconductor;的稳定,最新的发布版本,请参阅S4Vectors

在Bioconductor向量和类似容器的基础

Bioconductor版本:3.14

S4Vectors包定义了向量和虚拟类和一组通用函数列表扩展普通的语义向量和列表在r包开发人员可以很容易地实现向量或类似对象的具体子类向量或列表。bob电竞体育官网此外,一些低级的具体子类一般利益(例如DataFrame、Rle和支安打)实现S4Vectors包本身(更多的是实现IRanges包和其他Bioconductor基础设施包)。

作者:h .页,m·劳伦斯和p . Aboyoun

维修工:Bioconductor包维护者<维护者bioconductor.org >

从内部引用(R,回车引用(“S4Vectors”)):

安装

安装这个包,开始R(版本“4.1”)并输入:

如果(!要求(“BiocManager”,悄悄地= TRUE)) install.packages (“BiocManager”) BiocManager::安装(“S4Vectors”)

R的旧版本,请参考适当的Bioconductor释放

文档

查看文档的版本这个包安装在您的系统,开始R和输入:

browseVignettes (“S4Vectors”)

PDF R脚本 一个快速概述S4类的系统
PDF R脚本 S4Vectors包的概述
PDF R脚本 Rle技巧和窍门
PDF 参考手册
文本 新闻

细节

biocViews DataRepresentation,基础设施,软件
版本 0.32.4
Bioconductor自 BioC 3.0 (r - 3.1)(7.5年)
许可证 艺术- 2.0
取决于 R(> = 4.0.0)、方法、效用,统计,stats4,BiocGenerics(> = 0.37.0)
进口
链接
建议 IRanges,GenomicRanges,SummarizedExperiment,矩阵,DelayedArray,ShortRead,,data.table,RUnit,BiocStyle
SystemRequirements
增强了
URL //www.anjoumacpherson.com/packages/S4Vectors
BugReports https://github.com/Bioconductor/S4Vectors/issues
取决于我 altcdfenvs,AnnotationHubData,ATACseqQC,bambu,Biostrings,BiSeq,BRGenomics,BSgenome,bumphunter,红衣主教,CellMapper,CexoR,chimeraviz,ChIPComp,ChIPpeakAnno,chipseq,ChIPseqR,ClassifyR,cliProfiler,食典委,coseq,CSAR,CSSQ,DelayedArray,DelayedDataFrame,DESeq2,DEXSeq,DirichletMultinomial,DMCFB,DMCHMM,DMRcaller,epigenomix,epihet,ExperimentHubData,ExpressionAtlas,fCCAC,FlowSorted.Blood.EPIC,GA4GHclient,generegulation,GenoGAM,GenomeInfoDb,GenomicAlignments,GenomicFeatures,GenomicRanges,GenomicScores,GenomicTuples,GeomxTools,girafe,groHMM,Gviz,HelloRanges,InPAS,InTAD,感兴趣,IRanges,LoomExperiment,m6Aboost,MetNet,MotifDb,MSnbase,NADfinder,NanoStringNCTools,NBAMSeq,OTUbase,莲花,pairkat,pd.ag,pd.aragene.1.0.st,pd.aragene.1.1.st,pd.ath1.121501,pd.barley1,pd.bovgene.1.0.st,pd.bovgene.1.1.st,pd.bovine,pd.bsubtilis,pd.cangene.1.0.st,pd.cangene.1.1.st,pd.canine,pd.canine.2,pd.celegans,pd.chicken,pd.chigene.1.0.st,pd.chigene.1.1.st,pd.chogene.2.0.st,pd.chogene.2.1.st,pd.citrus,pd.clariom.d.human,pd.clariom.s.human,pd.clariom.s.human.ht,pd.clariom.s.mouse,pd.clariom.s.mouse.ht,pd.clariom.s.rat,pd.clariom.s.rat.ht,pd.cotton,pd.cyngene.1.0.st,pd.cyngene.1.1.st,pd.cyrgene.1.0.st,pd.cyrgene.1.1.st,pd.cytogenetics.array,pd.drogene.1.0.st,pd.drogene.1.1.st,pd.drosgenome1,pd.drosophila.2,pd.e.coli.2,pd.ecoli,pd.ecoli.asv2,pd.elegene.1.0.st,pd.elegene.1.1.st,pd.equgene.1.0.st,pd.equgene.1.1.st,pd.felgene.1.0.st,pd.felgene.1.1.st,pd.fingene.1.0.st,pd.fingene.1.1.st,pd.genomewidesnp.5,pd.genomewidesnp.6,pd.guigene.1.0.st,pd.guigene.1.1.st,pd.hc.g110,pd.hg.focus,pd.hg.u133.plus.2,pd.hg.u133a,pd.hg.u133a.2,pd.hg.u133a.tag,pd.hg.u133b,pd.hg.u219,pd.hg.u95a,pd.hg.u95av2,pd.hg.u95b,pd.hg.u95c,pd.hg.u95d,pd.hg.u95e,pd.hg18.60mer.expr,pd.ht.hg.u133.plus.pm,pd.ht.hg.u133a,pd.ht.mg.430a,pd.hta.2.0,pd.hu6800,pd.huex.1.0.st.v2,pd.hugene.1.0.st.v1,pd.hugene.1.1.st.v1,pd.hugene.2.0.st,pd.hugene.2.1.st,pd.maize,pd.mapping250k.nsp,pd.mapping250k.sty,pd.mapping50k.hind240,pd.mapping50k.xba240,pd.margene.1.0.st,pd.margene.1.1.st,pd.medgene.1.0.st,pd.medgene.1.1.st,pd.medicago,pd.mg.u74a,pd.mg.u74av2,pd.mg.u74b,pd.mg.u74bv2,pd.mg.u74c,pd.mg.u74cv2,pd.mirna.1.0,pd.mirna.2.0,pd.mirna.3.0,pd.mirna.4.0,pd.moe430a,pd.moe430b,pd.moex.1.0.st.v1,pd.mogene.1.0.st.v1,pd.mogene.1.1.st.v1,pd.mogene.2.0.st,pd.mogene.2.1.st,pd.mouse430.2,pd.mouse430a.2,pd.mta.1.0,pd.mu11ksuba,pd.mu11ksubb,pd.nugo.hs1a520180,pd.nugo.mm1a520177,pd.ovigene.1.0.st,pd.ovigene.1.1.st,pd.pae.g1a,pd.plasmodium.anopheles,pd.poplar,pd.porcine,pd.porgene.1.0.st,pd.porgene.1.1.st,pd.rabgene.1.0.st,pd.rabgene.1.1.st,pd.rae230a,pd.rae230b,pd.raex.1.0.st.v1,pd.ragene.1.0.st.v1,pd.ragene.1.1.st.v1,pd.ragene.2.0.st,pd.ragene.2.1.st,pd.rat230.2,pd.rcngene.1.0.st,pd.rcngene.1.1.st,pd.rg.u34a,pd.rg.u34b,pd.rg.u34c,pd.rhegene.1.0.st,pd.rhegene.1.1.st,pd.rhesus,pd.rice,pd.rjpgene.1.0.st,pd.rjpgene.1.1.st,pd.rn.u34,pd.rta.1.0,pd.rusgene.1.0.st,pd.rusgene.1.1.st,pd.s.aureus,pd.soybean,pd.soygene.1.0.st,pd.soygene.1.1.st,pd.sugar.cane,pd.tomato,pd.u133.x3p,pd.vitis.vinifera,pd.wheat,pd.x.laevis.2,pd.x.tropicalis,pd.xenopus.laevis,pd.yeast.2,pd.yg.s98,pd.zebgene.1.0.st,pd.zebgene.1.1.st,pd.zebrafish,plethy,Rcwl,RegEnrich,RepViz,RNAmodR,RnBeads,scATAC.Explorer,scDataviz,segmentSeq,SeqGate,SNPlocs.Hsapiens.dbSNP141.GRCh38,光谱,SQLDataFrame,Structstrings,SummarizedBenchmark,TimeSeriesExperiment,topdownr,TreeSummarizedExperiment,一绺头发,三层,VariantExperiment,VariantTools,火神,XtraSNPlocs.Hsapiens.dbSNP141.GRCh38,XVector
进口我 ADImpute,affycoretools,aggregateBioVar,airpart,ALDEx2,AllelicImbalance,高山,AlpsNMR,amplican,AneuFinder,微生物,AnnotationDbi,AnnotationForge,AnnotationHub,annotatr,appreci8R,ASpediaFI,ASpli,atena,AUCell,自治,BadRegionFinder,舞会礼服,barcodetrackR,基础知识,BasicSTARRseq,后面;,BayesSpace,BindingSiteFinder,BiocIO,BiocNeighbors,BiocOncoTK,BiocSet,BiocSingular,biotmle,biovizBase,biscuiteer,BiSeq,BitSeq,咆哮,bnbc,BPRMeth,BrainSABER,分歧点,breakpointR,BSgenome,bsseq,BumpyMatrix,BUSpaRse,BUSseq,CAGEfightR,篮球选手,卡斯珀,催化剂,cBioPortalData,ccfindR,celaref,celda,CellaRepertorium,CellBarcode,celldex,censcyt,Cepo,CeTF,印度豹,别致的,ChIPanalyser,chipenrich,chipenrich.data,ChIPexoQual,ChIPQC,ChIPseeker,chipseqDBData,ChromSCape,chromstaR,chromswitch,chromVAR,西塞罗,CINdex,circRNAprofiler,CiteFuse,切肉刀,CluMSID,clusterExperiment,clustifyr,cn.mops,cn,CNVPanelizer,CNVRanger,可可,CoGAPS,我思,彗星,compEpiTools,consensusDE,consensusSeekeR,contiBAIT,copynumber,文案,CoreGx,CoverageView,CRISPRseek,CrispRVariants,csaw,CTDquerier,腰带,curatedMetagenomicData,curatedTCGAData,customProDB,cydar,cytoKernel,cytomapper,DAMEfinder,dasper,debrowser,解读,decompTumor2Sig,deconvR,反编排,DegNorm,DEGreport,DelayedMatrixStats,derfinder,derfinderHelper,derfinderPlot,DEScan2,DEWSeq,DiffBind,diffcyt,diffHic,diffloop,diffUTR,恐龙,DiscoRhythm,dittoSeq,DMRcate,dmrseq,定量给料器,DRIMSeq,DropletTestFiles,DropletUtils,drugTargetInteractions,dStruct,easyRNASeq,eegc,eisaR,埃尔默,ENCODExplorer,enhancerHomologSearch,ENmix,EnrichmentBrowser,enrichTF,ensembldb,ensemblVEP,epigraHMM,epistack,EpiTxDb,epivizr,epivizrData,epivizrStandalone,erma,esATAC,EventPointer,exomePeak2,ExperimentHub,ExperimentSubset,ExploreModelMatrix,FastqCleaner,fastseg,FilterFFPE,FindIT2,FindMyFriends,鱼池,fitCons.UCSC.hg19,火焰,flowCore,flowWorkspace,弗雷泽,GA4GHshiny,gcapc,GDSArray,genbankr,GeneRegionScan,《创世纪》,GeneStructureTools,GeneTonic,genomation,genomeIntervals,GenomicAlignments,GenomicDataCommons,GenomicFiles,GenomicInteractions,GenomicOZone,GenomicSuperSignature,GeoMxWorkflows,ggbio,Glimma,gmapR,gmoviz,还装有,哥特,GRmetrics,GSEABenchmarkeR,GSVA,GUIDEseq,gwascat,h5vc,HDF5Array,HiCBricks,HiCcompare,HiCDCPlus,HighlyReplicatedRNASeq,希尔达,hipathia,hmdbQuery,HMP16SData,HMP2Data,HTSeqGenie,HumanTranscriptomeCompendium,icetea,理想的,ILoReg,ima,imcdatasets,imcRtools,检查,InteractionSet,InteractiveComplexHeatmap,InterMineR,iSEE,iSEEu,isomiRs,iva,ivygapSE,IWTomics,karyoploteR,烤肉串,leeBamViews,lionessR,lipidr,lisaClust,loci2path,萝拉,MACPET,MACSr,MADSEQ,MafDb.1Kgenomes.phase1.GRCh38,MafDb.1Kgenomes.phase1.hs37d5,MafDb.1Kgenomes.phase3.GRCh38,MafDb.1Kgenomes.phase3.hs37d5,MafDb.ExAC.r1.0.GRCh38,MafDb.ExAC.r1.0.hs37d5,MafDb.ExAC.r1.0.nonTCGA.GRCh38,MafDb.ExAC.r1.0.nonTCGA.hs37d5,MafDb.gnomAD.r2.1.GRCh38,MafDb.gnomAD.r2.1.hs37d5,MafDb.gnomADex.r2.1.GRCh38,MafDb.gnomADex.r2.1.hs37d5,MafDb.TOPMed.freeze5.hg19,MafDb.TOPMed.freeze5.hg38,MafH5.gnomAD.v3.1.1.GRCh38,,马尔,桅杆,MatrixQCvis,mbkmeans,mCSEA,,meshr,MesKit,metabCombiner,MetaGxPancreas,metaseqR2,MetCirc,MethCP,methInheritSim,MethReg,methylCC,methylInheritance,methylKit,methylPipe,MethylSeqData,methylSig,methylumi,米娅,miaViz,microbiomeMarker,midasHLA,miloR,mimager,minfi,MinimumDistance,米拉,海市蜃楼,missMethyl,missRows,mitoClone2,MMAPPR2,MMDiff2,moanin,Modstrings,蒙娜丽莎,马赛克,MOSim,motifbreakR,motifmatchr,MouseGastrulationData,MouseThymusAgeing,mpra,msa,MsBackendMassbank,MsBackendMgf,MsBackendRawFileReader,MsCoreUtils,msgbsR,MSPrep,MultiAssayExperiment,MultiDataSet,mumosa,马斯喀特,musicatk,MutationalPatterns,mygene,myvariant,NanoMethViz,ncRNAtools,nearBynding,netDx,NoRCE,nucleoSim,诊断,nullranges,NxtIRFcore,奥得河,oligoClasses,ontoProc,openPrimeR,ORFik,Organism.dplyr,OrganismDbi,先驱者,packFinder,PAIRADISE,panelcn.mops,过去的,pcaExplorer,pd.atdschip.tiling,PDATK,pdInfoBuilder,periodicDNA,PharmacoGx,phastCons100way.UCSC.hg19,phastCons100way.UCSC.hg38,phastCons7way.UCSC.hg38,phemd,PhIPData,PhosR,,pipeComp,plyranges,pmp,pogo,聚酯,pqsfinder,婴儿车,prebs,preciseTAD,PrecisionTrialDrawer,primirTSS,高伦雅芙,procoil,proDA,profileplyr,ProteoDisco,pulsedSilac,PureCN,PWMEnrich,qcmetrics,QFeatures,qpgraph,QuasR,R3CPET,R453Plus1Toolbox,RadioGx,RaggedExperiment,ramr,RareVariantVis,Rcade,美国广播公司,RcwlPipelines,重新计票,recount3,recountmethylation,收回,地区,regionReport,regsplice,regutools,REMP,Repitools,ResidualMatrix,restfulSE,rexposome,rfaRm,RGMQL,rhdf5client,RiboDiPA,RiboProfiling,ribor,ribosomeProfilingQC,RJMCMCNucleosomes,RMassBank,Rmmquant,rnaEditr,RNAmodR.AlkAnilineSeq,RNAmodR.ML,RNAmodR.RiboMethSeq,咆哮,Rqc,Rsamtools,rScudo,RTCGAToolbox,研制,rtracklayer,SC3,ScaledMatrix,scanMiR,scanMiRApp,SCArray,,scClassify,scDblFinder,scDD,scds,散粒,scmap,scMerge,SCnorm,范围,scp,scpdata,scPipe,食物,scRNAseq,颈背,scTensor,scTGIF,scTreeViz,天窗,sechm,裂殖体,SeqArray,seqCAT,seqsetvis,SeqSQC,SeqVarTools,芝麻,SEtools,sevenbridges,sevenC,SGSeq,ShortRead,SimBenchData,SingleCellExperiment,SingleCellMultiModal,singleCellTK,,singscore,sitadela,skewr,弹弓,击杀,SNPhood,SNPlocs.Hsapiens.dbSNP.20101109,SNPlocs.Hsapiens.dbSNP141.GRCh38,SNPlocs.Hsapiens.dbSNP144.GRCh37,SNPlocs.Hsapiens.dbSNP144.GRCh38,SNPlocs.Hsapiens.dbSNP149.GRCh38,SNPlocs.Hsapiens.dbSNP150.GRCh38,SNPlocs.Hsapiens.dbSNP151.GRCh38,soGGi,SomaticCancerAlterations,SomaticSignatures,猎犬,spatialDE,SpatialExperiment,spatialHeatmap,spatialLIBD,spatzie,spicyR,,飞溅,SplicingGraphs,分裂,sRACIPE,srnadiff,斯坦,strandCheckR,结构体,StructuralVariantAnnotation,SummarizedExperiment,svaNUMT,svaRetro,SynExtend,systemPipeR,TAPseq,TarSeqQC,TBSignatureProfiler,TCGAbiolinks,TCGAutils,TFBSTools,TFHAZ,tidySingleCellExperiment,tidySummarizedExperiment,TileDBArray,三硝基甲苯,ToxicoGx,trackViewer,tradeSeq,TrajectoryUtils,transcriptR,TransView,时尚的,三轮车,tRNA,tRNAdbImport,tRNAscanImport,TSCAN,tscR,TSRchitect,肺结核,TVTB,twoddpcr,txcutr,tximeta,Ularcirc,UMI4Cats,universalmotif,VanillaICE,VariantAnnotation,VariantFiltering,VaSP,VCFArray,伶盗龙,VplotR,wavClusteR,weitrix,wiggleplotr,XCIR,xcms,XNAString,XtraSNPlocs.Hsapiens.dbSNP141.GRCh38,XtraSNPlocs.Hsapiens.dbSNP144.GRCh37,XtraSNPlocs.Hsapiens.dbSNP144.GRCh38,XVector,山药,zellkonverter
建议我 alternativeSplicingEvents.hg19,alternativeSplicingEvents.hg38,BiocGenerics,conclus,curatedAdipoChIP,curatedAdipoRNA,dearseq,epivizrChart,globalSeq,GWASTools,GWENA,杂环胺,maftools,马提尼,MicrobiotaProcess,MungeSumstats,ObMiTi,RTCGA,TFEA.ChIP,TFutils,tidybulk,traviz
我的链接 Biostrings,cn,解读,DegNorm,DelayedArray,GenomicAlignments,GenomicRanges,HDF5Array,IRanges,烤肉串,MatrixRider,Rsamtools,rtracklayer,ShortRead,Structstrings,三层,VariantAnnotation,VariantFiltering,XVector
构建报告

包档案

遵循bob 体育网址 指示在R会话中使用这个包。

源包 S4Vectors_0.32.4.tar.gz
Windows二进制 S4Vectors_0.32.4.zip
macOS 10.13(高山脉) S4Vectors_0.32.4.tgz
源库 git克隆https://git.bioconductor.org/packages/S4Vectors
源库(开发人员访问) git克隆git@git.bioconductor.org:包/ S4Vectors
包短Url //www.anjoumacpherson.com/packages/S4Vectors/
包下载报告 下载数据

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