BiocStyle

DOI:10.18129 / B9.bioc.BiocStyle

这个包是3.14版本Bioconductor;的稳定,最新的发布版本,请参阅BiocStyle

小插曲和其他Bioconductor文档的标准样式

Bioconductor版本:3.14

提供标准格式风格Bioconductor PDF, HTML文档。bob彩票平台包小插曲说明使用和功能。

作者:Andrzej Oleś(aut),迈克·史密斯(施)马丁·摩根(施),沃尔夫冈•休伯[所有]Bioconductor包(cre)

维修工:Bioconductor包<维护者bioconductor.org >

从内部引用(R,回车引用(“BiocStyle”)):

安装

安装这个包,开始R(版本“4.1”)并输入:

如果(!要求(“BiocManager”,悄悄地= TRUE)) install.packages (“BiocManager”) BiocManager::安装(“BiocStyle”)

R的旧版本,请参考适当的Bioconductor释放

文档

查看文档的版本这个包安装在您的系统,开始R和输入:

browseVignettes (“BiocStyle”)

HTML R脚本 创作R减价小插曲
PDF R脚本 2.0 Bioconductor乳胶风格
PDF 参考手册
文本 新闻

细节

biocViews 软件
版本 2.22.0
Bioconductor自 BioC 2.13 (r - 3.0)(8.5年)
许可证 艺术- 2.0
取决于
进口 bookdown,knitr(> = 1.30),rmarkdown(> = 1.2),统计,跑龙套,yaml,BiocManager
链接
建议 BiocGenerics,RUnit,htmltools
SystemRequirements
增强了
URL https://github.com/Bioconductor/BiocStyle
BugReports https://github.com/Bioconductor/BiocStyle/issues
取决于我 curatedBreastData,cytofWorkflow,methylationArrayAnalysis,netresponse,org.Mxanthus.db,Pigengene,rnaseqGene,RnaSeqGeneEdgeRQL,,sangeranalyseR
进口我 abseqR,ASpli,BiocWorkflowTools,BPRMeth,BubbleTree,chimeraviz,指南针,德科,DiscoRhythm,FieldEffectCrc,geneXtendeR,GeoMxWorkflows,梅丽莎,meshr,MSnID,PathoStat,PhyloProfile,PhyloProfileData,锐步,regionReport,Rmmquant,Rqc,scTensor,scTGIF,simpleSingleCell,srnadiff
建议我 ABAData,ABAEnrichment,王牌,ADAMgui,ADImpute,AffiXcan,affycoretools,aggregateBioVar,AHEnsDbs,AHLRBaseDbs,AHMeSHDbs,AHPathbankDbs,AHPubMedDbs,AHWikipathwaysDbs,ALDEx2,alevinQC,AllelicImbalance,AMOUNTAIN,amplican,AneuFinder,微生物,注释,AnnotationDbi,AnnotationFilter,AnnotationForge,AnnotationHub,AnnotationHubData,annotationTools,annotatr,anota2seq,铁砧,AnVILBilling,AnVILPublish,APAlyzer,arrayQualityMetrics,数组,artMS,ASGSCA,亚瑟士,ASICSdata,AssessORF,AssessORFData,分配,ATACseqQC,atena,atSNP,AUCell,awst,BaalChIP,培根,bamsignals,强盗,barcodetrackR,basecallQC,基础知识,蛇怪,basilisk.utils,后面;,bayNorm,baySeq,beachmat,beadarray,BeadDataPackR,BEARscc,BEclear,benchdamic,benchmarkfdrData2019,BgeeDB,bigmelon,BindingSiteFinder,bioassayR,biobtreeR,bioCancer,BiocCheck,BiocDockerManager,BiocFileCache,BiocIO,BiocMetaWorkflow,BiocNeighbors,BiocOncoTK,BioCor,BiocParallel,BiocPkgTools,BiocSet,BiocSingular,BiocSklearn,biocthis,biodb,biodbChebi,biodbHmdb,biodbKegg,biodbLipidmaps,biodbUniprot,BioImageDbs,biomaRt,biomformat,BioMM,BioNERO,BioPlex,biosigner,biotmle,BitSeq,blacksheepr,blima,blimaTestingData,BloodCancerMultiOmics2017,咆哮,bnbc,bodymapRat,brainflowprobes,BrainSABER,分歧点,breakpointR,breakpointRdata,brendaDb,BRGenomics,BridgeDbR,BrowserViz,bsseq,bugsigdbr,BUMHMM,BumpyMatrix,BUScorrect,BUSpaRse,BUSseq,咖啡馆,CAGEfightR,cageminer,篮球选手,CAGEWorkflow,癌症,CancerInSilico,萤石,红衣主教,CardinalWorkflows,催化剂,cbaf,cBioPortalData,cbpManager,ccfindR,ccrepe,celda,CellaRepertorium,CellBarcode,cellbaseR,CellBench,celldex,CelliD,cellity,CellMapper,CellMapperData,CellMixS,cellTree,censcyt,Cepo,CexoR,cfDNAPro,ChemmineDrugs,ChemmineOB,ChemmineR,芝加哥,ChIPComp,chipenrich,chipenrich.data,ChIPexoQual,ChIPexoQualExample,ChIPpeakAnno,ChIPQC,chipseqDB,chipseqDBData,ChromSCape,chromstaR,chromswitch,CIMICE,CiteFuse,ClassifyR,cleanUpdTSeq,切肉刀,限幅器,cliProfiler,CLLmethylation,clusterExperiment,clusterSeq,ClusterSignificance,clustifyr,clustifyrdatahub,cmapR,cn,CNVRanger,可可,CoGAPS,我思,彗星,compcodeR,conclus,承认,consensusOV,consensusSeekeR,CONSTANd,contiBAIT,conumee,CopyhelpeR,CopyNeutralIMA,CopyNumberPlots,文案,警戒线,CoRegNet,CoreGx,科拉尔,coseq,COSMIC.67,cosmiq,CountClust,covRNA,cpvSNP,CRISPRseek,CrispRVariants,csaw,csawUsersGuide,csdR,CSSQ,CTCF,CTDquerier,ctgGEM,ctsGE,curatedBladderData,curatedCRCData,curatedMetagenomicData,curatedOvarianData,curatedTBData,curatedTCGAData,customCMPdb,cydar,CyTOFpower,CytoGLMM,cytoKernel,cytomapper,CytoTree,dada2,dagLogo,DAMEfinder,DaMiRseq,DAPAR,dasper,dcanr,dce,ddPCRclust,debCAM,decompTumor2Sig,decontam,deconvR,解耦,反编排,DEGreport,DelayedArray,DelayedMatrixStats,DelayedRandomArray,DelayedTensor,densvis,,服饰,depmap,DEqMS,derfinder,derfinderData,derfinderHelper,derfinderPlot,DEScan2,DEWSeq,DExMA,DExMAdata,DEXSeq,DIAlignR,DiffBind,diffcyt,diffuStats,diffUTR,恐龙,dir.expiry,不和谐的,dittoSeq,DmelSGI,DMRScan,dmrseq,DNABarcodeCompatibility,DNABarcodes,doppelgangR,多萝西娅,Doscheda,定量给料器,drawProteins,DRIMSeq,DropletTestFiles,DropletUtils,drugTargetInteractions,DSS,dStruct,DuoClustering2018,dupRadar,更容易,easierData,easyreporting,easyRNASeq,EBImage,EDASeq,EGSEA,EGSEA123,eiR,eisaR,埃尔默,ELMER.data,EmpiricalBrownsMethod,emtdata,EnrichmentBrowser,ensembldb,EpiDISH,epigraHMM,epistack,EpiTxDb,EpiTxDb.Hs.hg38,EpiTxDb.Mm.mm10,EpiTxDb.Sc.sacCer3,epivizr,epivizrChart,epivizrData,epivizrServer,epivizrStandalone,erma,ERSSA,逃避,EuPathDB,evaluomeR,EventPointer,EWCE,ewceData,excluderanges,ExperimentHub,ExperimentHubData,ExperimentSubset,ExploreModelMatrix,ExpressionNormalizationWorkflow,FamAgg,famat,FastqCleaner,fCCAC,fCI,fcScan,盛宴,小伙子,FilterFFPE,FindIT2,FindMyFriends,火焰,flowAI,flowcatchR,flowGraph,flowMap,FlowSOM,flowSpecs,fmcsR,fobitools,弗雷泽,furrowSeg,GA4GHclient,GA4GHshiny,空对空导弹,gcapc,GCSConnection,GCSFilesystem,GDSArray,genbankr,GeneAccord,GeneExpressionSignature,genefilter,genefu,GeneNetworkBuilder,GeneOverlap,geneplast,geneplast.data,generegulation,《创世纪》,GeneStructureTools,GeneTonic,GenoGAM,GenomeInfoDb,GenomicAlignments,GenomicDataCommons,GenomicDistributions,GenomicDistributionsData,GenomicFeatures,GenomicFiles,GenomicInteractions,GenomicRanges,GenomicScores,GenomicState,GenomicSuperSignature,GenomicTuples,GenVisR,GeuvadisTranscriptExpr,ggbio,ggmsa,GGPA,ggspavis,GladiaTOX,Glimma,glmGamPoi,glmSparseNet,gmoviz,GMRP,GOexpress,GOfuncR,还装有,goSTAG,gpart软件,gpuMagic,制粒机,葡萄,石墨,GreyListChIP,GRmetrics,groHMM,GSAR,GSE103322,GSE13015,GSE159526,GSE62944,GSEABase,GSEABenchmarkeR,GSEAmining,GSgalgoR,GSVA,GUIDEseq,Gviz,GWAS.BAYES,gwascat,gwasurvivr,GWENA,哈曼,HarmanData,杂环胺,HCAData,HD2013SGI,HDCytoData,HelloRanges,HelloRangesData,爬虫,HGC,HiCBricks,HighlyReplicatedRNASeq,highthroughputassays,Hiiragi2013,希尔达,hipathia,HIREewas,HiTC,HMP16SData,HMP2Data,HPAanalyze,hpAnnot,hpar,HPiP,HTSFilter,HubPub,HumanAffyData,HumanTranscriptomeCompendium,理想的,iGC,IgGeneUsage,igvR,IHW,IHWpaper,illuminaio,imageHTS,ima,imcdatasets,imcRtools,immunoClust,immunotation,infercnv,InPAS,检查,InTAD,InteractionSet,InterCellar,InterMineR,电离,iPath,IRanges,ISAnalytics,iSEE,iSEEu,isomiRs,iva,karyoploteR,kissDE,花边,ldblock,lefser,liftOver,LinkHD,Linnorm,lipidr,lisaClust,loci2path,萝拉,LoomExperiment,LowMACA,lpsymphony,LRBaseDbi,LRcell,LRcellTypeMarkers,m6Aboost,MACPET,MACSr,made4,maEndToEnd,MAGeCKFlute,,mAPKL,马尔,微波激射器,桅杆,MatrixQCvis,MatrixRider,,工商管理硕士,mbkmeans,mbt,MCbiclust,mCSEA,mCSEAdata,,,MEB,MEDIPS,megadepth,墨西拿,metabCombiner,MetaboCoreUtils,metabolomicsWorkbenchR,MetaboSignal,metagene,metagene2,MetaGxOvarian,MetaGxPancreas,metapod,metavizr,methimpute,methInheritSim,MethPed,MethReg,MethylAid,MethylAidData,methylCC,methylclock,methylInheritance,MethylMix,MethylSeqData,methylSig,MetNet,mfa,米娅,miaSim,miaViz,微生物组,microbiomeDataSets,microbiomeMarker,MIGSA,miloR,mimager,minfi,minionSummaryData,miQC,米拉,miRcomp,miRmine,miRSM,miRspongeR,mirTarRnaSeq,missMethyl,missRows,mistyR,mixOmics,MMAPPR2,MMAPPR2data,MMDiff2,MMUPHin,moanin,这种款式,Modstrings,MOFA2,mogsa,现代艺术博物馆,蒙娜丽莎,MoonlightR,mosbi,MOSim,motifbreakR,MotifDb,motifStack,MouseFM,MouseGastrulationData,MouseThymusAgeing,mpra,MQmetrics,MsBackendMassbank,MsBackendMgf,MsBackendRawFileReader,MsCoreUtils,MsFeatures,msigdb,msImpute,MSMB,MSnbase,MSPrep,msPurity,msqc1,msqrob2,MSstats,MSstatsBioData,MSstatsLiP,MSstatsLOBD,MSstatsPTM,MSstatsSampleSize,MSstatsTMT,MSstatsTMTPTM,MultiAssayExperiment,MultiBaC,multicrispr,MultiDataSet,multiGSEA,multiHiCcompare,multiMiR,multiSight,mumosa,MungeSumstats,马斯喀特,muscData,musicatk,MutationalPatterns,MWASTools,mygene,myvariant,mzR,NADfinder,NanoStringDiff,NanoStringQCPro,纳米管,NBSplice,ncGTW,ncRNAtools,ndexr,Nebulosa,NestLink,netbiov,netboxr,netDx,nethet,netOmics,NetPathMiner,netprioR,netSmooth,NeuCA,NewWave,ngsReports,nondetects,NormalyzerDE,normr,NPARC,npGSEA,nucleoSim,诊断,奥得河,益生元,omicade4,omicRexposome,omicsPrint,Omixer,OmnipathR,奥纳西斯,OnassisJavaLibs,OncoScore,OncoSimulR,ontoProc,optimalFlow,optimalFlowData,OPWeight,ORFhunteR,ORFik,Organism.dplyr,orthogene,Oscope,先驱者,OVESEG,PAA,packFinder,莲花,PAIRADISE,pairkat,PANTHER.db,PanVizGenerator,parathyroidSE,parglms,拙劣的模仿,pasilla,PasillaTranscriptExpr,Path2PPI,paxtoolsr,pcaExplorer,PCAN,PCHiCdata,PDATK,PeacoQC,peakPantheR,PepsNMR,PepsNMRData,perturbatr,phantasus,phenopath,philr,PhIPData,PhosR,phyloseq,π,钢琴,pipeComp,plethy,plotGrouper,plyranges,pmp,pogo,POMA,PoTRA,powerTCR,POWSC,ppcseq,ppiData,pqsfinder,婴儿车,preciseTAD,preciseTADhub,PrecisionTrialDrawer,王子,profileplyr,profileScoreDist,后代,projectR,pRoloc,pRolocGUI,适当的,Prostar,ProteoDisco,蛋白质组学,ProteomicsAnnotationHubData,ProteoMM,PSEA,ptairData,ptairMS,PureCN,PWMEnrich,qcmetrics,QDNAseq,QFeatures,qpgraph,qsea,qsmooth,QSutils,Qtlizer,quantiseqr,quantro,QuasR,R3CPET,RadioGx,RaggedExperiment,,ramwas,RandomWalkRestartMH,randRotation,rat2302frmavecs,rawrr,Rbowtie,Rcade,rcellminer,rcellminerData,rCGH,RcisTarget,Rcwl,RcwlPipelines,RCy3,RCyjs,rDGIdb,ReactomePA,重新计票,recount3,recountmethylation,recountWorkflow,收回,红色的,地区,regsplice,regutools,ReQON,ResidualMatrix,restfulSE,rexposome,rfaRm,Rfastp,RforProteomics,rfPred,RGMQL,RGMQLlib,RGraph2js,RGSEA,rhdf5,rhdf5client,rhdf5filters,Rhdf5lib,Rhisat2,Rhtslib,RiboCrypt,RiboProfiling,riboSeqR,ribosomeProfilingQC,,RJMCMCNucleosomes,RLHub,RLSeq,RMassBank,rmspc,RNAmodR,RNAmodR.AlkAnilineSeq,RNAmodR.Data,RNAmodR.ML,RNAmodR.RiboMethSeq,RNAseq123,rnaseqcomp,RnaSeqSampleSize,RnaSeqSampleSizeData,Rnits,ROCpAI,的方式,ropls,rpx,rqt,rrvgo,Rsamtools,rScudo,rsem,rSWeeP,RTCGAToolbox,研制,RTNduals,RTNsurvival,Rtpca,rTRM,RUVSeq,旅游房车,rWikiPathways,S4Vectors,sampleClassifier,sampleClassifierData,sangerseqR,土星,ScaledMatrix,scanMiR,scanMiRApp,scanMiRData,scATAC.Explorer,,scCB2,scClassify,scDblFinder,scDD,scds,scFeatureFilter,SCLCBam,scMerge,SCnorm,司康饼,scoreInvHap,scp,scPCA,scpdata,食物,scReClassify,scRepertoire,scRNAseq,颈背,scTreeViz,天窗,sechm,segmentSeq,selectKSigs,seqCAT,SeqGate,seqLogo,seqPattern,seqsetvis,SeqSQC,测序,SeqVarTools,芝麻,SEtools,sevenC,SGSeq,SharedObject,shinyMethyl,ShortRead,SIAMCAT,SigCheck,SigFuge,signatureSearch,SigsPack,SimBenchData,SIMD,SimFFPE,similaRpeak,SIMLR,sincell,Single.mTEC.Transcriptomes,SingleCellExperiment,SingleCellMultiModal,singleCellTK,,SingscoreAMLMutations,sitePath,激流回旋,弹弓,紧身的,SMAD,snapcount,一口,SNPediaR,SNPhood,SNPhoodData,soGGi,寄居,SOMNiBUS,麻雀,sparseDOSSA,sparseMatrixStats,sparsenetgls,SparseSignatures,SpatialCPie,spatialDE,SpatialExperiment,spatialHeatmap,spatialLIBD,specL,光谱,SpectralTAD,spicyR,SpidermiR,飞溅,分裂,splots,spqn,SPsimSeq,sRACIPE,srnadiff,经验丰富的人,斯坦,StarBioTrek,STATegRa,statTarget,STexampleData,strandCheckR,结构体,Structstrings,structToolbox,SubCellBarCode,SummarizedBenchmark,SummarizedExperiment,股东价值分析,svaRetro,swfdr,switchde,突触,synapter,synaptome.data,SynExtend,systemPipeR,systemPipeRdata,systemPipeShiny,systemPipeTools,TabulaMurisData,TabulaMurisSenisData,TADCompare,tanggle,TAPseq,TargetDecoy,TargetSearch,鞑靼,TBSignatureProfiler,TCGAbiolinks,TCGAbiolinksGUI,TCGAbiolinksGUI.data,TCGAutils,TENxBrainData,TENxBUSData,TENxPBMCData,TENxVisiumData,TFARM,TFBSTools,TFHAZ,TFutils,tidybulk,tidySingleCellExperiment,tidySummarizedExperiment,tigre,TileDBArray,timecoursedata,timeOmics,TimerQuant,tissueTreg,TMExplorer,TMixClust,烤面包,但在,topconfects,topdownr,ToxicoGx,泛太平洋伙伴关系,tracktables,trackViewer,TrajectoryUtils,transcriptogramer,transcriptR,transomics2cytoscape,TraRe,tra利用,旅行,TreeAndLeaf,treekoR,TreeSummarizedExperiment,时尚的,一绺头发,三轮车,tripr,tRNA,tRNAdbImport,tRNAscanImport,TRONCO,TTMap,肺结核,TurboNorm,TVTB,twoddpcr,txcutr,Ularcirc,UMI4Cats,uncoverappLib,UniProt.ws,variancePartition,VariantAnnotation,VariantFiltering,变体,VariantToolsData,VCFArray,伶盗龙,左页,vidger,ViSEAGO,vissE,vsn,西瓜,wavClusteR,weitrix,个字,xcms,Xeva,XNAString,山药,YAPSA,zebrafishRNASeq,zellkonverter,zinbwave
我的链接
构建报告

包档案

遵循bob 体育网址 指示在R会话中使用这个包。

源包 BiocStyle_2.22.0.tar.gz
Windows二进制 BiocStyle_2.22.0.zip
macOS 10.13(高山脉) BiocStyle_2.22.0.tgz
源库 git克隆https://git.bioconductor.org/packages/BiocStyle
源库(开发人员访问) git克隆git@git.bioconductor.org:包/ BiocStyle
包短Url //www.anjoumacpherson.com/packages/BiocStyle/
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