BiocParallel

DOI:10.18129 / B9.bioc.BiocParallel

这个包是3.14版本Bioconductor;的稳定,最新的发布版本,请参阅BiocParallel。

Bioconductor设施并行评估

Bioconductor版本:3.14

这个包提供修改版本和新颖的实现函数并行评估,根据使用Bioconductor对象。

作者:Bioconductor包维护者(cre),马丁•摩根(aut) Jiefei王(aut),瓦莱丽Obenchain (aut),米歇尔•朗(aut)瑞恩•汤普森(aut) Nitesh Turaga (aut),亚伦Lun(施),亨利克·本特松(施)

维修工:Bioconductor包维护者<维护者bioconductor.org >

安装

安装这个包,开始R(版本“4.1”)并输入:

如果(!要求(“BiocManager”,悄悄地= TRUE)) install.packages (“BiocManager”) BiocManager::安装(“BiocParallel”)

R的旧版本,请参考适当的Bioconductor释放。

文档

查看文档的版本这个包安装在您的系统,开始R和输入:

browseVignettes (“BiocParallel”)

PDF	R脚本	1。介绍BiocParallel
PDF	R脚本	2。介绍BatchtoolsParam
PDF	R脚本	3所示。错误日志和调试
PDF	R脚本	4所示。随机数在BiocParallel
PDF		参考手册
文本		新闻

细节

biocViews	基础设施,软件
版本	1.28.3
Bioconductor自	BioC 2.13 (r - 3.0)(8.5年)
许可证	GPL-2 | GPL-3
取决于	方法,R (> = 3.5.0)
进口	属性,跑龙套,futile.logger平行,雪
链接	黑洞
建议	BiocGenerics、工具、foreach,BatchJobs,BBmisc,doParallel,Rmpi,GenomicRanges,RNAseqData.HNRNPC.bam.chr14,TxDb.Hsapiens.UCSC.hg19.knownGene,VariantAnnotation,Rsamtools,GenomicAlignments,ShortRead,codetools,RUnit,BiocStyle,knitr,batchtools,data.table
SystemRequirements	c++ 11
增强了
URL	https://github.com/Bioconductor/BiocParallel
BugReports	https://github.com/Bioconductor/BiocParallel/issues
取决于我	培根,BEclear,红衣主教,ClassifyR,clusterSeq,consensusSeekeR,文案,德科,DEWSeq,DEXSeq,DMCFB,DMCHMM,doppelgangR,DSS,盛宴,弗雷泽,GenomicFiles,hiReadsProcessor,检查,iPath,事,工商管理硕士,metagene,metagene2,metapone,ncGTW,Oscope,先驱者,PCAN,periodicDNA,pRoloc,Rqc,测序,ShortRead,SigCheck,光谱,STROMA4,SummarizedBenchmark,股东价值分析,variancePartition,xcms
进口我	abseqR,ADImpute,AffiXcan,ALDEx2,AlphaBeta,阿尔卑斯山脉,AlpsNMR,amplican,亚瑟士,ASpediaFI,atena,atSNP,bambu,强盗,基础知识,后面;,bayNorm,benchdamic,BiocNeighbors,BioCor,BiocSingular,BioMM,BioNERO,BioNetStat,biotmle,biscuiteer,咆哮,brendaDb,bsseq,CAGEfightR,篮球选手,cellbaseR,CellBench,CelliD,CellMixS,censcyt,Cepo,ChIPexoQual,ChIPQC,ChromSCape,chromswitch,chromVAR,CNVRanger,CoGAPS,调味品,consensusDE,contiBAIT,CoreGx,coseq,cpvSNP,CrispRVariants,csaw,cydar,CytoGLMM,cytoKernel,cytomapper,dasper,dcGSA,debCAM,DEComplexDisease,derfinder,DEScan2,DESeq2,DEsingle,DiffBind,恐龙,dmrseq,剂量,DRIMSeq,DropletUtils,沙丘,更容易,easyRNASeq,EMDomics,enhancerHomologSearch,erma,ERSSA,逃避,exomePeak2,ExpHunterSuite,fgsea,FindIT2,FindMyFriends,flowcatchR,flowSpecs,GDCRNATools,《创世纪》,GenoGAM,GenomicAlignments,genotypeeval,gmapR,gscreend,GSEABenchmarkeR,GSVA,GUIDEseq,h5vc,HiCBricks,HiCcompare,HTSeqGenie,HTSFilter,iasva,icetea,理想的,IHWpaper,ima,imcRtools,InPAS,感兴趣,电离,首次公开募股,ISAnalytics,iva,KinSwingR,LineagePulse,lisaClust,loci2path,LowMACA,LRcell,MACPET,mbkmeans,MCbiclust,metabomxtr,metaseqR2,MethCP,MethylAid,methylGSA,methylInheritance,methylscaper,MetNet,米娅,miaViz,MIGSA,miloR,minfi,mixOmics,MMAPPR2,MOGAMUN,蒙娜丽莎,motifbreakR,MPRAnalyze,MsBackendMassbank,MsBackendMgf,MsBackendRawFileReader,MSnbase,msqrob2,MSstatsSampleSize,multiHiCcompare,mumosa,马斯喀特,NBAMSeq,NBSplice,NPARC,NxtIRFcore,OmicsLonDA,ORFik,OVESEG,PAIRADISE,PCAtools,PDATK,pengls,PharmacoGx,pipeComp,婴儿车,PrecisionTrialDrawer,高伦雅芙,proFIA,profileplyr,ProteoDisco,qpgraph,qsea,QuasR,RadioGx,Rcwl,重新计票,RegEnrich,REMP,RiboCrypt,RJMCMCNucleosomes,RNAmodR,Rsamtools,RUVcorr,土星,scanMiR,scanMiRApp,嘘,scClassify,scDblFinder,scDD,scde,短链脂肪酸,散粒,scMerge,SCnorm,司康饼,scoreInvHap,scPCA,食物,scRecover,颈背,scShapes,scTHI,天窗,芝麻,SEtools,sigFeature,signatureSearch,singleCellTK,单,singscore,SNPhood,soGGi,麻雀,SpectralTAD,spicyR,飞溅,SplicingGraphs,srnadiff,TAPseq,TarSeqQC,TBSignatureProfiler,ternarynet,TFBSTools,TMixClust,ToxicoGx,TPP2D,tradeSeq,TraRe,TreeSummarizedExperiment,时尚的,TSRchitect,TVTB,txcutr,VariantFiltering,VariantTools,伶盗龙,waddR,weitrix,zinbwave
建议我	beachmat,CAGEWorkflow,DelayedArray,DIAlignR,GenomicDataCommons,glmGamPoi,HDF5Array,MethylAidData,netSmooth,omicsPrint,PureCN,randRotation,RcisTarget,锐步,scGPS,SeqArray,Single.mTEC.Transcriptomes,TENxBrainData,TENxPBMCData,TFutils,TileDBArray,tofsims,TrajectoryUtils,trena,TSCAN,universalmotif
我的链接
构建报告

包档案

遵循bob 体育网址 指示在R会话中使用这个包。

源包	BiocParallel_1.28.3.tar.gz
Windows二进制	BiocParallel_1.28.3.zip(32位和64位)
macOS 10.13(高山脉)	BiocParallel_1.28.3.tgz
源库	git克隆https://git.bioconductor.org/packages/BiocParallel
源库(开发人员访问)	git克隆git@git.bioconductor.org:包/ BiocParallel
包短Url	//www.anjoumacpherson.com/packages/BiocParallel/
包下载报告	下载数据