# # # R代码从装饰图案的segmentSeq来源。Rnw“# # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # #代码块1号: 2))停止(“hS对象包含错误的位点的数量。可能失败。”)# # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # #代码块11号:segmentSeq。Rnw: 107 - 109 # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # cS <——classifySeg (sD = sD、广告=广告、cD =商品,cl = cl) c # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # #代码块12号:segmentSeq。Rnw: 112 - 114 # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # #如果(abs (nrow (cS) - 64) > 2)停止(“cS对象是错误的大小(应该~ 142行)。可能失败。”)如果(任何(abs (colSums (exp (cS@locLikelihoods)) - c(29岁,36))> 2))停止(“cS对象包含错误的位点的数量。可能失败。”)# # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # #代码块13号:segPlot # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # par (mfrow = c (2, 1), 3 = c (2 6 2 2) plotGenome(广告、商品= " > Chr1 ",从而向限制= c (1,1 e5) showNumber = FALSE,帽= 50)plotGenome(广告、cS = " > Chr1 ",从而向限制= c (1,1 e5) showNumber = FALSE,帽= 50)# # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # #代码块14号:figSeg # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # par (mfrow = c (2, 1), 3 = c (2 6 2 2) plotGenome(广告、商品= " > Chr1 ",从而向限制= c (1,1 e5) showNumber = FALSE,帽= 50)plotGenome(广告、cS = " > Chr1 ",从而向限制= c (1,1 e5) showNumber = FALSE,帽= 50)# # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # #代码块数量15:segmentSeq。Rnw: 146 - 148 # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # #位点<——selectLoci (cS,富兰克林·德兰诺·罗斯福= 0.05)位点# # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # #代码块数量16:segmentSeq。Rnw: 154 - 155 # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # #集团(cS) <——列表(濒死经历= c(1, 1, 1, 1),德= c (“AGO6”、“AGO6”,“AGO4”、“AGO4”)) # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # #代码块数量17:segmentSeq。Rnw: 159 - 160 # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # cS <——getPriors (cS, cl = cl) # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # #代码块18号:segmentSeq。Rnw: 164 - 165 # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # cS <——getLikelihoods (cS, nullData = TRUE, cl = cl) # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # #代码块19:segmentSeq。Rnw: 170 - 171 # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # topCounts (cS, NULL,数量= 3)# # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # #代码块数量20:segmentSeq。Rnw: 176 - 177 # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # topCounts (cS,“濒死经历”,数量= 3)# # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # 21:代码块segmentSeq。Rnw: 182 - 183 # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # topCounts (cS,“德”,数量= 3)# # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # #代码块数量22: