IRanges

DOI:10.18129 / B9.bioc.IRanges

此包适用于Bioconductor 3.13版;有关稳定的最新发布版本,请参见IRanges

生物导体中整数范围操作的基础

Bioconductor版本:3.13

提供高效的低级和高度可重用的S4类,用于在带注释的整数范围内存储、操作和聚合。实现范围操作的代数,包括查找重叠和最近邻居的有效算法。定义高效的列表类,用于存储、转换和聚合大型分组数据,即原子向量和数据框架的集合。

作者:H. Pagès, P. Aboyoun和M. Lawrence

维护者:Bioconductor Package维护者< Maintainer at Bioconductor .org>

引文(从R内,输入引用(“IRanges”)):

安装

要安装此包,请启动R(版本“4.1”)并输入:

如果(!requireNamespace("BiocManager", quiet = TRUE)) install.packages("BiocManager")

对于R的旧版本,请参考相应的Bioconductor释放

文档

要查看系统中安装的此包版本的文档,请启动R并输入:

browseVignettes(“IRanges”)

PDF R脚本 IRanges包概述
PDF 参考手册
文本 新闻

细节

biocViews DataRepresentation基础设施软件
版本 2.26.0
在Bioconductor BioC 2.3 (R-2.8)(13年)
许可证 艺术- 2.0
取决于 R(>= 4.0.0),方法,utils,统计,BiocGenerics(> = 0.37.0),S4Vectors(> = 0.29.19)
进口 stats4
链接 S4Vectors
建议 XVectorGenomicRangesRsamtoolsGenomicAlignmentsGenomicFeaturesBSgenome.Celegans.UCSC.ce2pasillaBamSubsetRUnitBiocStyle
SystemRequirements
增强了
URL //www.anjoumacpherson.com/packages/IRanges
BugReports https://github.com/Bioconductor/IRanges/issues
全靠我 AnnotationDbiAnnotationHubDataBaalChIPbambubiomvRCNSBiostringsBiSeqBSgenomeBubbleTreebumphunter咖啡馆卡斯珀CexoRchimeravizChIPCompChIPpeakAnnochipseq食典委consensusSeekeRCSARCSSQcustomProDBdeepSNVDelayedArrayDESeq2DEXSeqDirichletMultinomialDMCFBDMCHMMDMRcallerepigenomixepihetExClusterexomeCopyfCCACgeneRxClusterGenomeInfoDbGenomicAlignmentsGenomicDistributionsGenomicFeaturesGenomicRangesgroHMMgtrellisGvizharbChIPHelloRangesHiTCIdeoVizInTADLiebermanAidenHiC2009methyAnalysisMotifDbNADfinderORFikOTUbasepd.agpd.aragene.1.0.stpd.aragene.1.1.stpd.ath1.121501pd.barley1pd.bovgene.1.0.stpd.bovgene.1.1.stpd.bovinepd.bsubtilispd.cangene.1.0.stpd.cangene.1.1.stpd.caninepd.canine.2pd.celeganspd.chickenpd.chigene.1.0.stpd.chigene.1.1.stpd.chogene.2.0.stpd.chogene.2.1.stpd.citruspd.clariom.d.humanpd.clariom.s.humanpd.clariom.s.human.htpd.clariom.s.mousepd.clariom.s.mouse.htpd.clariom.s.ratpd.clariom.s.rat.htpd.cottonpd.cyngene.1.0.stpd.cyngene.1.1.stpd.cyrgene.1.0.stpd.cyrgene.1.1.stpd.cytogenetics.arraypd.drogene.1.0.stpd.drogene.1.1.stpd.drosgenome1pd.drosophila.2pd.e.coli.2pd.ecolipd.ecoli.asv2pd.elegene.1.0.stpd.elegene.1.1.stpd.equgene.1.0.stpd.equgene.1.1.stpd.felgene.1.0.stpd.felgene.1.1.stpd.fingene.1.0.stpd.fingene.1.1.stpd.genomewidesnp.5pd.genomewidesnp.6pd.guigene.1.0.stpd.guigene.1.1.stpd.hc.g110pd.hg.focuspd.hg.u133.plus.2pd.hg.u133apd.hg.u133a.2pd.hg.u133a.tagpd.hg.u133bpd.hg.u219pd.hg.u95apd.hg.u95av2pd.hg.u95bpd.hg.u95cpd.hg.u95dpd.hg.u95epd.hg18.60mer.exprpd.ht.hg.u133.plus.pmpd.ht.hg.u133apd.ht.mg.430apd.hta.2.0pd.hu6800pd.huex.1.0.st.v2pd.hugene.1.0.st.v1pd.hugene.1.1.st.v1pd.hugene.2.0.stpd.hugene.2.1.stpd.maizepd.mapping250k.nsppd.mapping250k.stypd.mapping50k.hind240pd.mapping50k.xba240pd.margene.1.0.stpd.margene.1.1.stpd.medgene.1.0.stpd.medgene.1.1.stpd.medicagopd.mg.u74apd.mg.u74av2pd.mg.u74bpd.mg.u74bv2pd.mg.u74cpd.mg.u74cv2pd.mirna.1.0pd.mirna.2.0pd.mirna.3.0pd.mirna.4.0pd.moe430apd.moe430bpd.moex.1.0.st.v1pd.mogene.1.0.st.v1pd.mogene.1.1.st.v1pd.mogene.2.0.stpd.mogene.2.1.stpd.mouse430.2pd.mouse430a.2pd.mta.1.0pd.mu11ksubapd.mu11ksubbpd.nugo.hs1a520180pd.nugo.mm1a520177pd.ovigene.1.0.stpd.ovigene.1.1.stpd.pae.g1apd.plasmodium.anophelespd.poplarpd.porcinepd.porgene.1.0.stpd.porgene.1.1.stpd.rabgene.1.0.stpd.rabgene.1.1.stpd.rae230apd.rae230bpd.raex.1.0.st.v1pd.ragene.1.0.st.v1pd.ragene.1.1.st.v1pd.ragene.2.0.stpd.ragene.2.1.stpd.rat230.2pd.rcngene.1.0.stpd.rcngene.1.1.stpd.rg.u34apd.rg.u34bpd.rg.u34cpd.rhegene.1.0.stpd.rhegene.1.1.stpd.rhesuspd.ricepd.rjpgene.1.0.stpd.rjpgene.1.1.stpd.rn.u34pd.rta.1.0pd.rusgene.1.0.stpd.rusgene.1.1.stpd.s.aureuspd.soybeanpd.soygene.1.0.stpd.soygene.1.1.stpd.sugar.canepd.tomatopd.u133.x3ppd.vitis.viniferapd.wheatpd.x.laevis.2pd.x.tropicalispd.xenopus.laevispd.yeast.2pd.yg.s98pd.zebgene.1.0.stpd.zebgene.1.1.stpd.zebrafishpepStatperiodicDNAplyrangesproBAMrPSICQUICRepVizrfPredrGADEMrGREATRJMCMCNucleosomesRNAmodRScale4C范围SGSeqSICtoolsSNPlocs.Hsapiens.dbSNP.20101109SNPlocs.Hsapiens.dbSNP.20120608SNPlocs.Hsapiens.dbSNP141.GRCh38SNPlocs.Hsapiens.dbSNP142.GRCh37StructstringsTEQCtra利用三层VariantToolsVplotRXtraSNPlocs.Hsapiens.dbSNP141.GRCh38XVector
进口我 ALDEx2AllelicImbalance高山amplicanAneuFinderannmapannotatrappreci8RArrayExpressHTSASpediaFIASpliAssessORFATACseqQC舞会礼服bamsignalsBasicSTARRseqBBCAnalyzerbeadarrayBiocOncoTKbiovizBaseBiSeqBitSeqbnbcBPRMeth分歧点breakpointRBRGenomicsBSgenomebsseqBUMHMMBumpyMatrixBUSpaRseCAGEfightR篮球选手cBioPortalDatacgdv17别致的ChIPanalyserchipenrichchipenrich.dataChIPexoQualChIPQCChIPseekerchipseqChIPseqRChIPSeqSpikeChIPsimChromHeatMapChromSCapechromstaRchromswitchchromVAR西塞罗CINdexcircRNAprofilercleanUpdTSeq切肉刀cn.mopscnCNVfilteRCNVPanelizerCNVRangerCNVrd2可可彗星compEpiToolsComplexHeatmapcontiBAITconumeecopynumberCopyNumberPlots文案CoverageViewCRISPRseekCrispRVariantscsawdada2DAMEfinderdasperdebrowser解读DegNormDelayedMatrixStatsdeltaCaptureCderfinderderfinderHelperderfinderPlotDEScan2DiffBinddiffHicdiffloopdiffUTRDMRcateDMRScandmrseqDominoEffectdpeakDRIMSeqeasyRNASeqEDASeqeisaR埃尔默ENmixEnrichedHeatmapenrichTFensembldbepidecodeRepigraHMMEpiTxDbepivizrepivizrDataermaesATACEventPointerexomePeak2FastqCleanerfastsegfcScanFilterFFPEFindMyFriendsfitCons.UCSC.hg19弗雷泽GA4GHclientgcapcgenbankrgeneAttributionGeneGeneInteR《创世纪》GeneStructureToolsGenoGAMgenomationgenomeIntervalsGenomicAlignmentsGenomicDataCommonsGenomicFilesGenomicInteractionsGenomicOZoneGenomicScoresGenomicStateGenomicTuplesgenosetgenotypeevalGenVisRggbiogirafegmapRgmovizGOfuncR还装有哥特gpart软件GSVAGUIDEseqgwascath5vcHDF5Array的热图HiCBricksHiCcompareHiCDCPlusHilbertCurveHTSeqGenie蜂鸟icetea理想的idr2dimaInPAS检查intansvInteractionSetInteractiveComplexHeatmap感兴趣InterMineRipdDbiSEEuIsoformSwitchAnalyzeRisomiRsivaIWTomicskaryoploteRleeBamViews萝拉MACPETMADSEQMafDb.1Kgenomes.phase1.GRCh38MafDb.1Kgenomes.phase1.hs37d5MafDb.1Kgenomes.phase3.GRCh38MafDb.1Kgenomes.phase3.hs37d5MafDb.ExAC.r1.0.GRCh38MafDb.ExAC.r1.0.hs37d5MafDb.ExAC.r1.0.nonTCGA.GRCh38MafDb.ExAC.r1.0.nonTCGA.hs37d5MafDb.gnomAD.r2.1.GRCh38MafDb.gnomAD.r2.1.hs37d5MafDb.gnomAD.r3.0.GRCh38MafDb.gnomADex.r2.1.GRCh38MafDb.gnomADex.r2.1.hs37d5MafDb.TOPMed.freeze5.hg19MafDb.TOPMed.freeze5.hg38MafH5.gnomAD.r3.0.GRCh38MafH5.gnomAD.v3.1.1.GRCh38微波激射器MatrixRidermCSEA联合化疗MEDIPSMesKitmetagenemetagene2metaseqR2MethCPmethimputemethInheritSimMethRegmethrixmethyAnalysismethylCCmethylInheritancemethylKitmethylPipeMethylSeekRMethylSeqDatamethylSigmethylumi米娅minfiMinimumDistance米拉missMethylMMAPPR2Modstrings马赛克MOSimmotifbreakRmotifmatchrMouseFMmsaMsBackendMassbankMsBackendMgfmsgbsRMSnbaseMultiAssayExperimentMultiDataSetmumosamusicatkMutationalPatternsNanoStringNCToolsncRNAtoolsnetDxNoRCEnormrnucleoSim诊断oligoClassesOmaDBOMICsPCAopenPrimeROrganism.dplyrOrganismDbi先驱者packFinderpanelcn.mopspcaExplorerpd.081229.hg18.promoter.medip.hx1pd.2006.07.18.hg18.refseq.promoterpd.2006.07.18.mm8.refseq.promoterpd.2006.10.31.rn34.refseq.promoterpd.atdschip.tilingpd.charm.hg18.examplepd.feinberg.hg18.me.hx1pd.feinberg.mm8.me.hx1pd.mirna.3.1pdInfoBuilderphastCons100way.UCSC.hg19phastCons100way.UCSC.hg38phastCons7way.UCSC.hg38PhIPDataπ图片plethypodkat聚酯pqsfinder婴儿车prebspreciseTADPrecisionTrialDrawerprimirTSS高伦雅芙profileplyrPureCNPvizQDNAseqQFeaturesqpgraphqPLEXanalyzerqseaQuasRR3CPETr3CseqR453Plus1ToolboxRaggedExperimentramrRareVariantVisRcade美国广播公司rCGH重新计票收回REDseq地区regutoolsREMPRepitoolsReportingToolsrfaRmRiboDiPARiboProfilingriboSeqRribosomeProfilingQCRIPATrnaEditrRNAmodR。AlkAnilineSeqRNAmodR。毫升RNAmodR。RiboMethSeqRNAprobRrnaSeqMapRnBeads咆哮RqcRsamtoolsRSVSim研制rtracklayer衬衣扫描。通用产品SCANVISSCArray散粒segmentSeqSeqArrayseqCATseqPatternseqplotsseqsetvisSeqSQCSeqVarTools芝麻sevenCShortRead签名者SimFFPESingleMoleculeFootprintingsitadela击杀snapcountSNPhoodSNPlocs.Hsapiens.dbSNP.20101109SNPlocs.Hsapiens.dbSNP.20120608SNPlocs.Hsapiens.dbSNP141.GRCh38SNPlocs.Hsapiens.dbSNP142.GRCh37SNPlocs.Hsapiens.dbSNP144.GRCh37SNPlocs.Hsapiens.dbSNP144.GRCh38SNPlocs.Hsapiens.dbSNP149.GRCh38SNPlocs.Hsapiens.dbSNP150.GRCh38SNPlocs.Hsapiens.dbSNP151.GRCh38soGGiSomaticCancerAlterationsSomaticSignaturesSparseSignaturesspatialLIBD光谱spicyRSplicingGraphs分裂srnadiff斯坦strandCheckRStructuralVariantAnnotationSummarizedExperimentSynExtendsystemPipeRsystemPipeRdataTAPseq目标TarSeqQCTCGAbiolinksTCGAutilsTCseqTFBSToolsTFEA。芯片TFHAZTitanCNA三硝基甲苯tracktablestrackViewertranscriptRTransViewTreeSummarizedExperiment三轮车tRNAtRNAdbImporttRNAscanImporttscRTSRchitectTVTBtximetaUMI4CatsUniquornuniversalmotifVanillaICEVarConVariantAnnotationVariantExperimentVariantFilteringVaSPwavClusteRwiggleplotrXCIRxcmsXNAStringXtraSNPlocs.Hsapiens.dbSNP141.GRCh38XtraSNPlocs.Hsapiens.dbSNP144.GRCh37XtraSNPlocs.Hsapiens.dbSNP144.GRCh38XVector山药
建议我 注释AnnotationHubBaseSpaceRBiocGenerics芝加哥ClassifyRepivizrChartGlimmagwascatGWASToolsHilbertVisHilbertVisGUImaftools马提尼海市蜃楼multicrisprMungeSumstatsregionReportRTCGAS4VectorsSigsPack飞溅TFutilsyeastRNASeq
链接到我 Biostringscn解读DegNormGenomicAlignmentsGenomicRanges烤肉串MatrixRiderRsamtoolsrtracklayerShortReadStructstrings三层VariantAnnotationVariantFilteringXVector
构建报告

包档案

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源包 IRanges_2.26.0.tar.gz
Windows二进制 IRanges_2.26.0.zip(32位和64位)
macOS 10.13 (High Sierra) IRanges_2.26.0.tgz
源库 git克隆https://git.bioconductor.org/packages/IRanges
源存储库(开发人员访问) git克隆git@git.bioconductor.org:packages/IRanges
包短Url //www.anjoumacpherson.com/packages/IRanges/
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