S4Vectors

DOI:10.18129 / B9.bioc.S4Vectors

此包适用于Bioconductor 3.12版本;有关稳定的最新发布版本,请参见S4Vectors

生物导体中矢量和列表容器的基础

Bioconductor版本:3.12

S4Vectors包定义了Vector和List虚拟类以及一组扩展r中普通Vector和列表语义的泛型函数。包开发人员可以轻松地将类Vector或类列表对象实现为Vector或List的具体子类。bob电竞体育官网此外,在S4Vectors包本身中实现了一些常见的低级具体子类(例如DataFrame、Rle和Hits)(更多的子类在IRanges包和其他Bioconductor基础设施包中实现)。

作者:H. Pagès, M. Lawrence和P. Aboyoun

维护者:Bioconductor Package维护者< Maintainer at Bioconductor .org>

引文(从R内,输入引用(“S4Vectors”)):

安装

要安装此包,请启动R(版本“4.0”)并输入:

如果(!requireNamespace("BiocManager", quiet = TRUE)) install.packages("BiocManager")::install("S4Vectors")

对于R的旧版本,请参考相应的Bioconductor释放

文档

要查看系统中安装的此包版本的文档,请启动R并输入:

browseVignettes(“S4Vectors”)

PDF R脚本 S4类系统的快速概述
PDF R脚本 S4Vectors包概述
PDF R脚本 Rle提示和技巧
PDF 参考手册
文本 新闻

细节

biocViews DataRepresentation基础设施软件
版本 0.28.1
在Bioconductor BioC 3.0 (R-3.1)(6.5年)
许可证 艺术- 2.0
取决于 R(>= 4.0.0),方法,utils, stats, stats4,BiocGenerics(> = 0.36.0)
进口
链接
建议 IRangesGenomicRangesSummarizedExperiment矩阵DelayedArrayShortReaddata.tableRUnitBiocStyle
SystemRequirements
增强了
URL //www.anjoumacpherson.com/packages/S4Vectors
BugReports https://github.com/Bioconductor/S4Vectors/issues
全靠我 altcdfenvsAnnotationHubDataATACseqQCbambuBiostringsBiSeqBRGenomicsBSgenomebumphunter红衣主教CellMapperCexoRchimeravizChIPCompChIPpeakAnnochipseqChIPseqRClassifyR食典委coseqCSARCSSQDelayedArrayDelayedDataFrameDESeq2DEXSeqDirichletMultinomialDMCFBDMCHMMDMRcallerepigenomixepiheteQTLExperimentHubDataExpressionAtlasfCCACFlowSorted.Blood.EPICGA4GHclientgeneregulationGenoGAMGenomeInfoDbGenomicAlignmentsGenomicFeaturesGenomicRangesGenomicScoresGenomicTuplesgirafegroHMMGvizHelloRangesInPASInTAD感兴趣IRangesLoomExperimentMotifDbMSnbaseNADfinderNBAMSeqOTUbase莲花pd.agpd.aragene.1.0.stpd.aragene.1.1.stpd.ath1.121501pd.barley1pd.bovgene.1.0.stpd.bovgene.1.1.stpd.bovinepd.bsubtilispd.cangene.1.0.stpd.cangene.1.1.stpd.caninepd.canine.2pd.celeganspd.chickenpd.chigene.1.0.stpd.chigene.1.1.stpd.chogene.2.0.stpd.chogene.2.1.stpd.citruspd.clariom.d.humanpd.clariom.s.humanpd.clariom.s.human.htpd.clariom.s.mousepd.clariom.s.mouse.htpd.clariom.s.ratpd.clariom.s.rat.htpd.cottonpd.cyngene.1.0.stpd.cyngene.1.1.stpd.cyrgene.1.0.stpd.cyrgene.1.1.stpd.cytogenetics.arraypd.drogene.1.0.stpd.drogene.1.1.stpd.drosgenome1pd.drosophila.2pd.e.coli.2pd.ecolipd.ecoli.asv2pd.elegene.1.0.stpd.elegene.1.1.stpd.equgene.1.0.stpd.equgene.1.1.stpd.felgene.1.0.stpd.felgene.1.1.stpd.fingene.1.0.stpd.fingene.1.1.stpd.genomewidesnp.5pd.genomewidesnp.6pd.guigene.1.0.stpd.guigene.1.1.stpd.hc.g110pd.hg.focuspd.hg.u133.plus.2pd.hg.u133apd.hg.u133a.2pd.hg.u133a.tagpd.hg.u133bpd.hg.u219pd.hg.u95apd.hg.u95av2pd.hg.u95bpd.hg.u95cpd.hg.u95dpd.hg.u95epd.hg18.60mer.exprpd.ht.hg.u133.plus.pmpd.ht.hg.u133apd.ht.mg.430apd.hta.2.0pd.hu6800pd.huex.1.0.st.v2pd.hugene.1.0.st.v1pd.hugene.1.1.st.v1pd.hugene.2.0.stpd.hugene.2.1.stpd.maizepd.mapping250k.nsppd.mapping250k.stypd.mapping50k.hind240pd.mapping50k.xba240pd.margene.1.0.stpd.margene.1.1.stpd.medgene.1.0.stpd.medgene.1.1.stpd.medicagopd.mg.u74apd.mg.u74av2pd.mg.u74bpd.mg.u74bv2pd.mg.u74cpd.mg.u74cv2pd.mirna.1.0pd.mirna.2.0pd.mirna.3.0pd.mirna.4.0pd.moe430apd.moe430bpd.moex.1.0.st.v1pd.mogene.1.0.st.v1pd.mogene.1.1.st.v1pd.mogene.2.0.stpd.mogene.2.1.stpd.mouse430.2pd.mouse430a.2pd.mta.1.0pd.mu11ksubapd.mu11ksubbpd.nugo.hs1a520180pd.nugo.mm1a520177pd.ovigene.1.0.stpd.ovigene.1.1.stpd.pae.g1apd.plasmodium.anophelespd.poplarpd.porcinepd.porgene.1.0.stpd.porgene.1.1.stpd.rabgene.1.0.stpd.rabgene.1.1.stpd.rae230apd.rae230bpd.raex.1.0.st.v1pd.ragene.1.0.st.v1pd.ragene.1.1.st.v1pd.ragene.2.0.stpd.ragene.2.1.stpd.rat230.2pd.rcngene.1.0.stpd.rcngene.1.1.stpd.rg.u34apd.rg.u34bpd.rg.u34cpd.rhegene.1.0.stpd.rhegene.1.1.stpd.rhesuspd.ricepd.rjpgene.1.0.stpd.rjpgene.1.1.stpd.rn.u34pd.rta.1.0pd.rusgene.1.0.stpd.rusgene.1.1.stpd.s.aureuspd.soybeanpd.soygene.1.0.stpd.soygene.1.1.stpd.sugar.canepd.tomatopd.u133.x3ppd.vitis.viniferapd.wheatpd.x.laevis.2pd.x.tropicalispd.xenopus.laevispd.yeast.2pd.yg.s98pd.zebgene.1.0.stpd.zebgene.1.1.stpd.zebrafishplethyRcwlRegEnrichRepVizRNAmodRRnBeadsscDatavizsegmentSeqSeqGateSNPlocs.Hsapiens.dbSNP141.GRCh38光谱SQLDataFrameStructstringsSummarizedBenchmarkTimeSeriesExperimenttopdownrTreeSummarizedExperiment三层VariantExperimentVariantTools火神XtraSNPlocs.Hsapiens.dbSNP141.GRCh38XVector
进口我 适应ADImputeaffycoretoolsaggregateBioVarALDEx2AllelicImbalance高山AlpsNMRamplicanAneuFinder微生物AnnotationDbiAnnotationForgeAnnotationHubannotatrappreci8RArrayTVASpediaFIASpliAUCellBadRegionFinder舞会礼服基础知识BasicSTARRseq后面;BayesSpaceBiocIOBiocNeighborsBiocOncoTKBiocSetBiocSingularbiotmlebiovizBasebiscuiteerBiSeqBitSeq咆哮bnbcBPRMethBrainSABER分歧点breakpointRBSgenomebsseqBUSpaRseCAGEfightR篮球选手卡斯珀催化剂cBioPortalDataccfindRcelarefceldaCellaRepertoriumcelldexCeTFcgdv17印度豹别致的ChIPanalyserchipenrichchipenrich.dataChIPexoQualChIPQCChIPseekerchipseqDBDataChIPSeqSpikeChromSCapechromstaRchromswitchchromVAR西塞罗CINdexcircRNAprofilerCiteFuse切肉刀CluMSIDclusterExperimentclustifyrcn.mopscnCNVPanelizerCNVRanger可可CoGAPS彗星compEpiToolsComplexHeatmapconsensusDEconsensusSeekeRcontiBAITcopynumber文案CoreGxCoverageViewCRISPRseekCrispRVariantscsaw腰带curatedMetagenomicDatacuratedTCGADatacustomProDBcydarcytomapperDAMEfinderdasperdebrowser解读decompTumor2Sig反编排DegNormDEGreportDelayedMatrixStatsderfinderderfinderHelperderfinderPlotDEScan2DEWSeqDiffBinddiffcytdiffHicdiffloopDiscoRhythmdittoSeqDMRcatedmrseq定量给料器DRIMSeqDropletTestFilesDropletUtilseasyRNASeqeegceisaR埃尔默ENCODExplorerENmixEnrichmentBrowserenrichTFensembldbensemblVEPEpiTxDbepivizrepivizrDataepivizrStandaloneermaesATACEventPointerexomePeak2ExperimentHubExploreModelMatrixFastqCleanerfastsegFilterFFPEFindMyFriends鱼池fitCons.UCSC.hg19flowCore弗雷泽FunciSNPGA4GHshinygcapcGDSArraygenbankrGeneRegionScan《创世纪》GeneStructureToolsGeneTonicgenomationgenomeIntervalsGenomicAlignmentsGenomicDataCommonsGenomicFilesGenomicInteractionsGenomicOZonegenosetGGBaseggbioGGtoolsGlimmagmapRgmoviz还装有哥特gQTLBasegQTLstatsGRmetricsGSEABenchmarkeRGSVAGUIDEseqgwascath5vcHCAExplorerHDF5ArrayHiCBricksHiCcompareHighlyReplicatedRNASeq希尔达hipathiahmdbQueryHMP16SDataHMP2DataHTSeqGenieHumanTranscriptomeCompendiumicetea理想的ILoRegimaImpulseDE2检查InteractionSetInterMineRiSEEiSEEuisomiRsivaivygapSEIWTomicsJunctionSeqkaryoploteR烤肉串leeBamViewslionessRlipidrloci2path萝拉MACPETMADSEQMafDb.1Kgenomes.phase1.GRCh38MafDb.1Kgenomes.phase1.hs37d5MafDb.1Kgenomes.phase3.GRCh38MafDb.1Kgenomes.phase3.hs37d5MafDb.ExAC.r1.0.GRCh38MafDb.ExAC.r1.0.hs37d5MafDb.ExAC.r1.0.nonTCGA.GRCh38MafDb.ExAC.r1.0.nonTCGA.hs37d5MafDb.gnomAD.r2.1.GRCh38MafDb.gnomAD.r2.1.hs37d5MafDb.gnomAD.r3.0.GRCh38MafDb.gnomADex.r2.1.GRCh38MafDb.gnomADex.r2.1.hs37d5MafDb.TOPMed.freeze5.hg19MafDb.TOPMed.freeze5.hg38MafH5.gnomAD.r3.0.GRCh38马尔马提尼桅杆mbkmeansmCSEAmeshrMesKitmetabCombinermetagenomeFeaturesMetaGxPancreasmetaseqR2MetCircMethCPmethInheritSimMethRegmethylCCmethylInheritancemethylKitmethylPipeMethylSeqDatamethylSigmethylumimethyvimmimagerminfiMinimumDistance米拉海市蜃楼missMethylmissRowsMMAPPR2MMDiff2Modstrings马赛克MOSimmotifbreakRmotifmatchrMotIVMouseGastrulationDatampramsaMsCoreUtilsmsgbsRMSPrepMultiAssayExperimentMultiDataSet马斯喀特musicatkMutationalPatternsmygenemyvariantNanoMethVizNarrowPeaksncRNAtoolsnearByndingnetDxNoRCEnucleoSim诊断oligoClassesontoProcopenPrimeRORFikOrganism.dplyrOrganismDbi先驱者packFinderPAIRADISEpanelcn.mops过去的PathwaySplicepcaExplorerpd.atdschip.tilingpdInfoBuilderperiodicDNAPGAPharmacoGxphastCons100way.UCSC.hg19phastCons100way.UCSC.hg38phastCons7way.UCSC.hg38phemdpipeCompplyrangespmppogo聚酯pqsfinder婴儿车prebspreciseTADPrecisionTrialDrawerprimirTSS高伦雅芙procoilproDAprofileplyrpulsedSilacPureCNPWMEnrichqcmetricsQFeaturesqpgraphQuasRR3CPETR453Plus1ToolboxRadioGxRaggedExperimentRareVariantVisRariantRcade美国广播公司重新计票recount3recountmethylation收回地区regionReportregspliceregutoolsREMPRepitoolsResidualMatrixrestfulSErexposomerfaRmRGMQLrhdf5clientRiboProfilingriborribosomeProfilingQCRJMCMCNucleosomesRMassBankRmmquantrnaEditrRNAmodR。AlkAnilineSeqRNAmodR。毫升RNAmodR。RiboMethSeqRNAprobR咆哮RqcRsamtoolsrScudoRTCGAToolbox研制rtracklayerSC3scClassifyscDblFinderscDDscds散粒scmapscMergeSCnorm范围scpscPipe食物scRNAseq颈背scTensorscTGIF天窗SeqArrayseqCATseqplotsseqsetvisSeqSQCSeqVarTools芝麻SEtoolssevenbridgessevenCSGSeqShortReadSingleCellExperimentSingleCellMultiModalsingleCellTKsingscoreskewr击杀SNPhoodSNPlocs.Hsapiens.dbSNP.20101109SNPlocs.Hsapiens.dbSNP141.GRCh38SNPlocs.Hsapiens.dbSNP144.GRCh37SNPlocs.Hsapiens.dbSNP144.GRCh38SNPlocs.Hsapiens.dbSNP149.GRCh38SNPlocs.Hsapiens.dbSNP150.GRCh38SNPlocs.Hsapiens.dbSNP151.GRCh38soGGiSomaticCancerAlterationsSomaticSignatures猎犬SpatialExperimentspatialLIBDspicyR飞溅SplicingGraphs分裂sRACIPEsrnadiff斯坦strandCheckR结构体SummarizedExperimentSynExtendTAPseqTarSeqQCTBSignatureProfilerTCGAbiolinksTCGAutilsTFBSToolsTFHAZtidySingleCellExperimenttidySummarizedExperimentTileDBArray三硝基甲苯ToxicoGxtrackViewertradeSeqtranscriptRTransView时尚的tRNAtRNAdbImporttRNAscanImportTSCANtscRTSRchitectTVTBtwoddpcrtximetaTxRegInfraUlarcircUMI4CatsuniversalmotifVanillaICEVariantAnnotationVariantFilteringvaspVaSPVCFArray伶盗龙VplotRwavClusteRweitrixwiggleplotrXCIRxcmsXtraSNPlocs.Hsapiens.dbSNP141.GRCh38XtraSNPlocs.Hsapiens.dbSNP144.GRCh37XtraSNPlocs.Hsapiens.dbSNP144.GRCh38XVector山药zellkonverter
建议我 alternativeSplicingEvents.hg19alternativeSplicingEvents.hg38BiocGenericscuratedAdipoChIPcuratedAdipoRNAdearseqepivizrChartglobalSeqGWASToolsGWENARTCGAStructuralVariantAnnotationTFEA。芯片TFutilstidybulk
链接到我 Biostringscn解读DegNormDelayedArrayGenomicAlignmentsGenomicRangesHDF5ArrayIRanges烤肉串MatrixRiderRsamtoolsrtracklayerShortReadStructstrings三层VariantAnnotationVariantFilteringXVector
构建报告

包档案

遵循bob 体育网址 在R会话中使用此包的说明。

源包 S4Vectors_0.28.1.tar.gz
Windows二进制 S4Vectors_0.28.1.zip(32位和64位)
macOS 10.13 (High Sierra) S4Vectors_0.28.1.tgz
源库 git克隆https://git.bioconductor.org/packages/S4Vectors
源存储库(开发人员访问) git克隆git@git.bioconductor.org:packages/S4Vectors
包短Url //www.anjoumacpherson.com/packages/S4Vectors/
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