版本2.8.0的变化----------------------新特性o新功能getListGIF被添加到与ListGIF web服务器(http://listgif.nubic.northwestern.edu)交互。ListGIF提供了一个快速分析解决方案,用于从查询基因列表中识别过度表示的生物医学概念。结果被呈现为一个单词。Reactome超链接已被修复。版本2.0.0的变化----------------------新特性o Reactome路径分析基于本地react .db。之前的xml查询已被禁用。BUG修复o完全支持引文。不支持Igraph0,这意味着节点索引从1开始,而不是在Igraph0中为0或小于0.6。X版图。o。CC和GO。MF level specified test had been fixed. CHANGES IN VERSION 1.14.0 ---------------------- NEW FEATURES o Multigroup concept-gene analysis html report supports interactive network with cytoscape web support as well as original fixed images o caBIO pathway and REACTOME pathway are included with xml queries, therefore, internet access is required. o The total number of pooled genes in Hypergeometric test can be set by the amount of genes in annotation library or the total annoted genes in the given species. o Add gene annotation summarization functions. Please check geneFunctionSummarize.pdf for more details. CHANGES IN VERSION 1.12.0 ---------------------- NEW FEATURES o Multigroup concept-gene analysis has been added. There are two types of representations. One is graphics table implemented by function 'drawTable', another is a html file generated by function 'groupReport' CHANGES IN VERSION 1.10.0 ---------------------- NEW FEATURES o Shades of nodes are introduced to stand for specified values given in the geneInput slot. o Statistical significant Ontology structure of given terms can be displayed by function 'geneAnswersConceptRelation' so that users can find more appropriate concepts in the significant concept list.