1.28.0版本的变化- - - - - - - - - - - - - - - - - - - - - - - -新特性o(1.27.1版)“makeOrgPackage()的支持本体。版本1.18.0变化- - - - - - - - - - - - - - - - - - - - - - - -修改o RSQLite弃用dbGetPreparedQuery / dbSendPreparedQuery;更新dbGetQuery / dbSendQuery / dbBind / dbFetch o更新为构建BioC 3.5 BUG修复解决tmp问题,改变outputDir NCBIFilesDir o固定一个BUG makeOrgPackageFromNCBI当没有条件的变化版本1.16.0 - - - - - - - - - - - - - - - - - - - - - - - - o添加新特性检查所需db0包是安装在makeDBPackage () o添加脚本创建viableIDs数据文件修改o删除过时的单元测试和轻视MAPCOUNTS ChipDb包模板更新ChipDb阿包模板加载在单元测试中DBI o允许构建没有——keep-empty-dirs国旗o misc代码清理重复描述依赖关系——解决符号名称空间——可重用单元测试(新的临时文件而不是重用)——避免unnecesary粘贴(),e。g、消息(粘贴())——使用loadNamespace()而不是需要()——避免1:n迭代格式,如SQL和如果其他(){}{}o / runalltests.Rout删除未使用的测试。在AnnDbPkg-templates o使用https:保存文件,而不是http: NCBI访问o重命名R代码和手册页文件符合高水平函数凹凸OrgDb版本为3.4版本o添加显式AnnotationDbi::: NCBIORG_DB_SeedGenerator()错误修复o getFastaSpeciesDirs()修剪\ R的Windows版本1.14.0变化- - - - - - - - - - - - - - - - - - - - - - - -阿新特性在OrgDbs sqlite数据库建立“别名”表为青蛙,黑猩猩,恒河和蚊子修改o模板更新AnnDbPkg人参考选择()接口o makeOrgPackageFromNCBI工作:- tax id时错误早在gene_info没有找到。广州——“rebuildCache”参数添加到控制重复下载-删除旧的代码和注释更新手册页o添加和PROSITE手册页包含NCBICHIP和NCBIORG包模板目录位置的允许通过阿wrapBaseDBPackages () o改变格式的许可证;报告当前版本AnnotationDbi o修改appendArabidopsisGenes(),以检查null的gene_id o DBI添加到“显示”;负载DBI _dbconn手册页o负载SQLite小插曲;不再免费AnnotationDbi: dbFileConnect()版本1.8.0的变化- - - - - - - - - - - - - - - - - - - - - - - - o添加新特性支持使orgDb对象/所有NCBI数据库taxIDs哪里有足够的数据(AnnotationHub添加)。这使得对象1100年的生物。1.6.0版本的变化- - - - - - - - - - - - - - - - - - - - - - - - o添加新特性支持广义makeChipPackage()函数,以便用户调查,映射到一个ID芯片可以使包只提供他们获得一个org包(不需要.db0包)。 o Adds support for making new inparanoid8 databases (for loading into AnnotationHub) CHANGES IN VERSION 1.4.0 ------------------------ NEW FEATURES o adds more general mechanism for creating organism packages. makeOrgPackage() will now allow users to pass in a series of data.frames, and (provided that they are formatted correctly) will compile those into a gene-centric organism package. The aim is to provide a more general mechanism for people who are working on organisms that are off the beaten path. o updates to the documentation (new vignettes) to better clarify how users who need to make new organism packages should do so. CHANGES IN VERSION 1.0.0 ------------------------ o All of the code that used to live in AnnotationDbi but was primarily involved in the creation of new annotation packages now lives here. NEW FEATURES o New biocViews tags have been added to the code that generates all the new Annotation packages. These allow users to search annotation packages by the type of annotation package that they are. So for example you can now quickly list only the TranscriptDb packages by using the web site.