MinimumDistance

DOI:10.18129/B9.bioc.MinimumDistance

This package is for version 3.11 of Bioconductor; for the stable, up-to-date release version, seeMinimumDistance.

A Package for De Novo CNV Detection in Case-Parent Trios

Bioconductor version: 3.11

Analysis of de novo copy number variants in trios from high-dimensional genotyping platforms.

Author: Robert B Scharpf and Ingo Ruczinski

Maintainer: Robert B Scharpf

Installation

To install this package, start R (version "4.0") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE)) install.packages("BiocManager") BiocManager::install("MinimumDistance")

For older versions of R, please refer to the appropriateBioconductor release.

Documentation

查看文档的版本包age installed in your system, start R and enter:

browseVignettes("MinimumDistance")

PDF	R Script	Detection of de novo copy number alterations in case-parent trios
PDF		Reference Manual
Text		NEWS

Details

biocViews	CopyNumberVariation,Microarray,SNP,Software
Version	1.32.0
In Bioconductor since	BioC 2.10 (R-2.15) (8.5 years)
License	Artistic-2.0
Depends	R (>= 3.5.0),VanillaICE(>= 1.47.1)
Imports	methods,BiocGenerics,Biobase,S4Vectors(>= 0.23.18),IRanges,GenomeInfoDb,GenomicRanges(>= 1.17.16),SummarizedExperiment(>= 1.15.4),oligoClasses,DNAcopy,ff,foreach,matrixStats,lattice,data.table, grid, stats, utils
LinkingTo
Suggests	human610quadv1bCrlmm(>= 1.0.3),BSgenome.Hsapiens.UCSC.hg18,BSgenome.Hsapiens.UCSC.hg19,RUnit
SystemRequirements
Enhances	snow,doSNOW
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Followbob 体育网址 instructions to use this package in your R session.

Source Package	MinimumDistance_1.32.0.tar.gz
Windows Binary	MinimumDistance_1.32.0.zip
macOS 10.13 (High Sierra)	MinimumDistance_1.32.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/MinimumDistance
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/MinimumDistance
Package Short Url	//www.anjoumacpherson.com/packages/MinimumDistance/
Package Downloads Report	Download Stats