| biocViews |
注释,报道,DataRepresentation,遗传学,GenomeAnnotation,基础设施,测序,软件 |
| 版本 |
1.40.0 |
| Bioconductor自 |
BioC 2.6 (r - 2.11)(10.5年) |
| 许可证 |
艺术- 2.0 |
| 取决于 |
R(> = 2.10)、方法stats4,BiocGenerics(> = 0.25.3),S4Vectors(> = 0.25.14),IRanges(> = 2.21.6),GenomeInfoDb(> = 1.15.2) |
| 进口 |
跑龙套,统计数据,XVector(> = 0.27.2) |
| 链接 |
S4Vectors,IRanges |
| 建议 |
矩阵,Biobase,AnnotationDbi,注释,Biostrings(> = 2.25.3),SummarizedExperiment(> = 0.1.5),Rsamtools(> = 1.13.53),GenomicAlignments,rtracklayer,BSgenome,GenomicFeatures,Gviz,VariantAnnotation,AnnotationHub,DESeq2,DEXSeq,刨边机,KEGGgraph,RNAseqData.HNRNPC.bam.chr14,pasillaBamSubset,KEGG.db,hgu95av2.db,hgu95av2probe,BSgenome.Scerevisiae.UCSC.sacCer2,BSgenome.Hsapiens.UCSC.hg19,BSgenome.Mmusculus.UCSC.mm10,TxDb.Athaliana.BioMart.plantsmart22,TxDb.Dmelanogaster.UCSC.dm3.ensGene,TxDb.Hsapiens.UCSC.hg19.knownGene,TxDb.Mmusculus.UCSC.mm10.knownGene,RUnit,消化,knitr,BiocStyle |
| SystemRequirements |
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| 增强了 |
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| URL |
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| 取决于我 |
AllelicImbalance,AneuFinder,annmap,AnnotationHubData,BaalChIP,Basic4Cseq,BasicSTARRseq,baySeq,biomvRCNS,BiSeq,bnbc,BPRMeth,breakpointR,BSgenome,bsseq,BubbleTree,bumphunter,咖啡馆,CAGEfightR,卡斯珀,ChAMPdata,负责,嵌合体,chimeraviz,ChIPanalyser,ChIPComp,ChIPpeakAnno,ChIPQC,chipseq,chroGPS,chromPlot,chromstaR,chromswitch,CINdex,cn.mops,cnvGSA,CNVPanelizer,CNVRanger,可可,compEpiTools,consensusSeekeR,CSAR,csaw,CSSQ,deepSNV,DEScan2,DESeq2,DEXSeq,DiffBind,diffHic,DMCFB,DMCHMM,DMRcaller,DMRforPairs,DNAshapeR,EatonEtAlChIPseq,EnrichedHeatmap,ensembldb,ensemblVEP,epigenomix,epihet,esATAC,EuPathDB,ExCluster,exomeCopy,fastseg,fCCAC,FunChIP,GeneBreak,geneRxCluster,GenomicAlignments,GenomicFeatures,GenomicFiles,GenomicOZone,GenomicScores,GenomicTuples,genoset,geuvStore2,gmapR,gmoviz,GMRP,哥特,GreyListChIP,groHMM,gtrellis,GUIDEseq,吉他,Gviz,HelloRanges,hiAnnotator,HiTC,IdeoViz,igvR,InPAS,InTAD,intansv,InteractionSet,感兴趣,IWTomics,karyoploteR,liftOver,微波激射器,工商管理硕士,梅丽莎,metagene,metagene2,methimpute,methyAnalysis,methylKit,methylPipe,minfi,MotifDb,MotIV,msgbsR,MutationalPatterns,NADfinder,OmicCircos,ORFik,PGA,plyranges,podkat,QuasR,r3Cseq,RaggedExperiment,Rariant,Rcade,收回,地区,RepViz,rfPred,rGREAT,riboSeqR,ribosomeProfilingQC,RIPSeeker,RJMCMCNucleosomes,RNAmodR,RnBeads,RnBeads.hg19,RnBeads.hg38,RnBeads.mm10,RnBeads.mm9,RnBeads.rn5,Rsamtools,RSVSim,rtracklayer,Scale4C,范围,segmentSeq,seqbias,seqCAT,测序,SGSeq,SICtools,SigFuge,击杀,SNPhood,SNPlocs.Hsapiens.dbSNP.20101109,SNPlocs.Hsapiens.dbSNP.20120608,SNPlocs.Hsapiens.dbSNP141.GRCh38,SNPlocs.Hsapiens.dbSNP142.GRCh37,SomaticSignatures,StructuralVariantAnnotation,SummarizedExperiment,TarSeqQC,三硝基甲苯,trackViewer,TransView,tra利用,tRNA,tRNAdbImport,tRNAscanImport,VanillaICE,VariantAnnotation,VariantExperiment,VariantTools,vtpnet,火神,wavClusteR,WGSmapp,XtraSNPlocs.Hsapiens.dbSNP141.GRCh38,YAPSA |
| 进口我 |
王牌,ALDEx2,高山,阿尔卑斯山脉,amplican,AnnotationFilter,annotatr,APAlyzer,apeglm,appreci8R,ArrayExpressHTS,ASpediaFI,ASpli,AssessORF,ATACseqQC,BadRegionFinder,舞会礼服,bamsignals,BBCAnalyzer,beadarray,击败,BiFET,BiocOncoTK,BioTIP,biovizBase,biscuiteer,BiSeq,brainflowprobes,分歧点,BRGenomics,BSgenome,BUSpaRse,篮球选手,cBioPortalData,CexoR,cgdv17,冠军,别致的,chipenrich,chipenrich.data,ChIPexoQual,ChIPseeker,chipseq,ChIPseqR,ChIPSeqSpike,chromDraw,ChromHeatMap,chromVAR,西塞罗,circRNAprofiler,cleanUpdTSeq,cn,CNVfilteR,彗星,compartmap,contiBAIT,conumee,copynumber,CopyNumberPlots,文案,COSMIC.67,CoverageView,crisprseekplus,CrispRVariants,customProDB,DAMEfinder,DChIPRep,debrowser,decompTumor2Sig,位深蓝,反编排,deltaCaptureC,derfinder,derfinderPlot,DEWSeq,diffloop,DMRcate,DMRScan,dmrseq,DominoEffect,DRIMSeq,easyRNASeq,EDASeq,eisaR,埃尔默,ELMER.data,ENCODExplorer,enrichTF,EpiTxDb,epivizr,epivizrData,erma,EventPointer,exomePeak2,fcScan,fitCons.UCSC.hg19,FourCSeq,弗雷泽,FunciSNP,GA4GHclient,gcapc,genbankr,geneAttribution,GeneGeneInteR,《创世纪》,GeneStructureTools,GenoGAM,genomation,genomeIntervals,GenomicAlignments,GenomicDataCommons,GenomicInteractions,genotypeeval,GenVisR,GGBase,ggbio,GGtools,GOfuncR,gpart软件,gQTLBase,gQTLstats,gwascat,h5vc,的热图,HiCBricks,HiCcompare,HilbertCurve,希尔达,hiReadsProcessor,HTSeqGenie,icetea,理想的,idr2d,ima,检查,InterMineR,ipdDb,IsoformSwitchAnalyzeR,isomiRs,iteremoval,iva,JunctionSeq,karyoploteR,leeBamViews,loci2path,萝拉,LoomExperiment,光民,M3D,MACPET,MADSEQ,MafDb.1Kgenomes.phase1.GRCh38,MafDb.1Kgenomes.phase1.hs37d5,MafDb.1Kgenomes.phase3.GRCh38,MafDb.1Kgenomes.phase3.hs37d5,MafDb.ExAC.r1.0.GRCh38,MafDb.ExAC.r1.0.hs37d5,MafDb.ExAC.r1.0.nonTCGA.GRCh38,MafDb.ExAC.r1.0.nonTCGA.hs37d5,MafDb.gnomAD.r2.1.GRCh38,MafDb.gnomAD.r2.1.hs37d5,MafDb.gnomAD.r3.0.GRCh38,MafDb.gnomADex.r2.1.GRCh38,MafDb.gnomADex.r2.1.hs37d5,MafDb.TOPMed.freeze5.hg19,MafDb.TOPMed.freeze5.hg38,MafH5.gnomAD.r3.0.GRCh38,mCSEA,联合化疗,餐,MEDIPS,MetaNeighbor,metaseqR2,MethCP,methInheritSim,methyAnalysis,methylCC,methylInheritance,MethylSeekR,methylSig,methylumi,MinimumDistance,米拉,missMethyl,MMAPPR2,MMDiff2,Modstrings,马赛克,motifbreakR,motifmatchr,MTseeker,MTseekerData,MultiAssayExperiment,MultiDataSet,multiHiCcompare,NarrowPeaks,netDx,NoRCE,normr,诊断,oligoClasses,OmaDB,openPrimeR,Organism.dplyr,OrganismDbi,先驱者,packFinder,panelcn.mops,过去的,pcaExplorer,pepDat,pepStat,phastCons100way.UCSC.hg19,phastCons100way.UCSC.hg38,phastCons7way.UCSC.hg38,π,图片,平,pqsfinder,婴儿车,prebs,PrecisionTrialDrawer,primirTSS,proBAMr,profileplyr,PureCN,Pviz,pwOmics,QDNAseq,qpgraph,qPLEXanalyzer,qsea,Qtlizer,R3CPET,R453Plus1Toolbox,RareVariantVis,美国广播公司,rCGH,重新计票,recountWorkflow,地区,regionReport,regutools,REMP,Repitools,rGADEM,RGMQL,Rhisat2,RiboProfiling,Rmmquant,RNAmodR.AlkAnilineSeq,RNAmodR.ML,RNAmodR.RiboMethSeq,RNAprobR,rnaSeqMap,咆哮,RTCGAToolbox,scmeth,scoreInvHap,scPipe,scRNAseq,颈背,seq2pathway,SeqArray,seqPattern,seqplots,seqsetvis,SeqSQC,SeqVarTools,芝麻,sevenC,ShortRead,签名者,SigsPack,SimFFPE,simulatorZ,snapcount,SNPlocs.Hsapiens.dbSNP.20101109,SNPlocs.Hsapiens.dbSNP.20120608,SNPlocs.Hsapiens.dbSNP141.GRCh38,SNPlocs.Hsapiens.dbSNP142.GRCh37,SNPlocs.Hsapiens.dbSNP144.GRCh37,SNPlocs.Hsapiens.dbSNP144.GRCh38,SNPlocs.Hsapiens.dbSNP149.GRCh38,SNPlocs.Hsapiens.dbSNP150.GRCh38,SNPlocs.Hsapiens.dbSNP151.GRCh38,soGGi,SomaticCancerAlterations,SparseSignatures,SpectralTAD,SplicingGraphs,分裂,srnadiff,斯坦,strandCheckR,systemPipeR,TAPseq,目标,TCGAbiolinks,TCGAutils,TCGAWorkflow,TCseq,TFARM,TFBSTools,TFEA.ChIP,TFHAZ,TitanCNA,tracktables,transcriptR,石棉水泥板,trena,三层,tscR,TSRchitect,TVTB,tximeta,TxRegInfra,Ularcirc,Uniquorn,VariantFiltering,VariantToolsData,vasp,VCFArray,waveTiling,wiggleplotr,XtraSNPlocs.Hsapiens.dbSNP141.GRCh38,XtraSNPlocs.Hsapiens.dbSNP144.GRCh37,XtraSNPlocs.Hsapiens.dbSNP144.GRCh38,yriMulti |
| 建议我 |
alternativeSplicingEvents.hg19,alternativeSplicingEvents.hg38,AnnotationHub,BeadArrayUseCases,biobroom,BiocGenerics,BiocParallel,CAGEWorkflow,芝加哥,ComplexHeatmap,腰带,epivizrChart,GenomeInfoDb,GenomicState,GeuvadisTranscriptExpr,Glimma,GSReg,GWASTools,HDF5Array,interactiveDisplay,IRanges,metaseqR,methrix,海市蜃楼,纳米管,NarrowPeaks,omicsPrint,奥纳西斯,parglms,RNAmodR.Data,RTCGA,S4Vectors,SeqGSEA,sesameData,Single.mTEC.Transcriptomes,TFutils |
| 我的链接 |
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| 构建报告 |
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