# # # R与装饰图案来源的代码的可视化。Rnw“# # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # #代码块1号:找到# # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # #库(geneplotter) # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # #代码块2号:开始# # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # (sample.ExpressionSet) eset =样本数据。ExpressionSet #遗留命名mytt < -函数(y, cov2) {y < -分裂(y, cov2) t。测试(ys ([1]), y [[2]])} ttout < - esApply (eset 1 mytt, eset类型)美元s1means < -酸式焦磷酸钠(ttout, x (x)函数估计美元[1])s2means < -酸式焦磷酸钠(ttout, x (x)函数估计美元[2])十分位数< -分位数(c (s1means s2means),聚合氯化铝= seq (0, 1, 1) s1class < -削减(s1means十分位数)名称(s1class) < -名称(s1means) s2class < -削减(s2means十分位数)名称(s2class) <——名字(s2means) # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # #代码块3号:到# # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # #关口< - dChip.colors (10) def.par < - par(没有。只读的= TRUE) #保存默认,重置……nf < -布局(矩阵(1:3,nr = 1),宽度= c (5 5 2)) chrObj <——buildChromLocation (hgu95av2) cPlot (chrObj) cColor (featureNames (eset)关口s1class, chrObj) cPlot (chrObj) cColor (featureNames (eset)关口s2class, chrObj)图像(1 1:10矩阵(1:10,数控= 10),坳=关口,轴= FALSE, xlab = " ", ylab = " ")轴(2)=(1:10),标签=水平(s1class),拉斯维加斯= 1)票面(def.par) # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # #代码块数量4:——f22 # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # par (mfrow = c (1,1)) mycols < - c(“红”、“暗绿色”、“蓝色”)(eset cov3美元)alongChrom (eset,“1”, chrObj plotFormat =“累积”,上校= mycols)