# #——setup_data消息= FALSE ------------------------------------------------ 库(适应)的数据(simpleArray) set.seed Y(1234) <——simulated_array <——simulated_treatment # #——adaptest_eval消息= FALSE --------------------------------------------- adaptest_out < -适应(Y = Y =一个W = NULL, n_top = 35, n_fold = 5, learning_library = c(“SL。全球语言监测机构”、“SL.mean”),parameter_wrapper =适应::rank_DE,绝对= FALSE,负= FALSE) # #——adaptest_summary消息= FALSE ------------------------------------------ 总结(adaptest_out) # #——get_comp_small ----------------------------------------------------------- get_composition(对象= adaptest_out类型=“小 ") ## ---- get_comp_big eval = FALSE ------------------------------------------------- # # 没有运行# get_composition(对象= adaptest_out,type = "大 ") ## ---- 情节 --------------------------------------------------------------------- 情节(adaptest_out) # #——sum_exp消息= FALSE --------------------------------------------------- 图书馆(SummarizedExperiment)图书馆(气管)数据(气管)# #——augment_se --------------------------------------------------------------- genes_sub < -订单(样本(seq_len (1000))) air_reduced < -气道(genes_sub,) # #——augment_airway ----------------------------------------------------------- simple_air < - cbind (air_reduced air_reduced) # #——make_tx_var -------------------------------------------------------------- # 使用二进制处理变量(必须只有0/1)dex_var = as.numeric (as.matrix (colData (simple_air))[3] - 1) # #——bioadaptest -------------------------------------------------------------- airway_out < bioadaptest (data_in = simple_air var_int = dex_var cntrl_set =零,n_top = 5, n_fold = 2, parameter_wrapper = rank_DE) # #——session_info回声= FALSE ------------------------------------------------- sessionInfo ()