# # - - - - - eval = FALSE - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - #如果!requireNamespace (“BiocManager”,悄悄地= TRUE)) # install.packages (BiocManager) # BiocManager::安装(TnT) # # - - - - - eval = FALSE - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # devtools:: install_github (“marlin-na / TnT”) # # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - suppressPackageStartupMessages(库(TnT)) # # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gr < - GenomicRanges::农庄(“chr7范围= IRanges(开始= c (26549019 l、26549019 l、26585667 l, 26585667 l、26594192 l、26623835 l、26659284 l、26721294 l、26821518 l、26991322 l),结束= c (26550183 l、26550183 l、26586158 l, 26586158 l、26594570 l、26624150 l、26660352 l、26721717 l、26823297 l、26991841 l)), ID = 1:10, Name =粘贴(“我的范围”,1:10))btrack < - TnT:: BlockTrack (gr) btrack # # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - args (TnT:: BlockTrack) # # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TnT:: TnTGenome (btrack) # #——回声= FALSE - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - df < - data.frame (stringsAsFactors = FALSE,构造函数= c (“BlockTrack”、“VlineTrack”、“PinTrack”、“LineTrack”、“AreaTrack”、“GeneTrackFromTxDb”、“FeatureTrack”、“GroupFeatureTrack”、“TxTrackFromTxDb”、“TxTrackFromGRanges”、“合并”))地图。源< - c (BlockTrack =“农庄”,FeatureTrack =“农庄”,VlineTrack =“宽为农庄”,PinTrack =“宽为农庄搭配价值观”,LineTrack =“宽为农庄搭配价值观”,AreaTrack =“宽为农庄搭配价值观”,GeneTrackFromTxDb =“TxDb TxTrackFromTxDb =“TxDb TxTrackFromGRanges =“农庄搭配“类型”和“tx_id”, GroupFeatureTrack =“GRangesList”,合并=“两个或两个以上的歌曲”)地图。功能< - c (BlockTrack = "块",VlineTrack =“vline PinTrack =“销”,LineTrack =“线”,AreaTrack =“区域”,GeneTrackFromTxDb =“基因”,FeatureTrack =“基因”,GroupFeatureTrack =“tx”, TxTrackFromTxDb =“tx”, TxTrackFromGRanges =“tx”=“复合”)合并地图。< -链接列表(BlockTrack = c(“块跟踪”=“tracktype-BlockTrack.html”), VlineTrack = c (“Vline跟踪”=“tracktype-VlineTrack.html”), PinTrack = c(“销跟踪”=“tracktype-PinTrack.html”), LineTrack = c(“线和区域跟踪”=“tracktype-LineTrack-AreaTrack.html”), AreaTrack = c(“线和区域跟踪”=“tracktype-LineTrack-AreaTrack.html”), GeneTrackFromTxDb = c(“基因跟踪和特征跟踪”=“tracktype-GeneTrack.html”), FeatureTrack = c(“基因跟踪和特征跟踪”=“tracktype-GeneTrack.html”), GroupFeatureTrack = c (Tx跟踪和GroupFeatureTrack”=“tracktype-TxTrack.html”), TxTrackFromTxDb = c (Tx跟踪和GroupFeatureTrack”=“tracktype-TxTrack.html”), TxTrackFromGRanges = c (Tx跟踪和GroupFeatureTrack”=“tracktype-TxTrack.html”),合并= c(“复合跟踪”=“track-CompositeTrack.html”)) genlink < -李(li.pairs) {vapp(函数。对,很有趣。值=字符(1)、功能(双){stopifnot(长度(双)= = 1)名称< -名字(双)基地。链接< - unname(双)sprintf (“(% s) (http://tnt.marlin.pub/articles/examples/%s)”,名字,base.link)})} df $ < -地图来源。源(df构造函数美元)df美元功能类型的< -地图。特性(df构造函数美元)df美元“例子”<——genlink (map.link [df构造函数美元])knitr:: kable (df) # # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TnT:: trackSpec (btrack,“背景”)btrack2 < - btrack TnT:: trackSpec (btrack2,“背景”)<——“blanchedalmond”TnT:: trackSpec (btrack2“标签”)<——“我的范围”TnT: trackSpec (btrack2,“高度”)< - 50 # # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - btrack2颜色#美元相当于“trackData (btrack2)美元颜色' btrack2颜色< -“darkseagreen4”#美元相当于“trackData (btrack2)美元颜色< -“darkseagreen4”# # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TnT:: trackData (btrack2) <——GenomicRanges:转变(TnT: trackData (btrack2), 10000) # # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TnT:: TnTBoard(列表(btrack btrack2)) # # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TnT::工具提示(btrack2) <——cbind (TnT:工具提示(btrack2) as.data.frame (TnT: trackData (btrack2))) TnT:: TnTGenome (btrack2、视图。范围= TnT: trackData (btrack2) [4] * . 05) # # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - set.seed (6) pintrack < - TnT:: pintrack(农庄(“chr7 IRanges(开始=样本(26300000:27000000,4),宽度= 1)),价值= c(1、3、2、4),颜色= c(“蓝色”、“黄”、“绿色”、“红色”))TnT:: TnTGenome ((pintrack btrack2),列表视图。范围=农庄(“chr7 IRanges (26550000, 26550000), coord.range = IRanges(26350000, 26350000),放大。允许= IRanges (50000、200000))