#更改日志显著改变这个项目将在这个文件记录。# # (1.2.02)——2018-04-10 - Bug修复:aggregateMethyl现在不应该破坏区域设置时考虑到没有重叠的甲基化数据样本。给出一个警告,告诉那个区域的名称集。# # [0.99.92]——2017-10-22——MIRAScore()包装器函数不再出口——BSReadBiseq不再补充道“sampleName”专栏# # [0.99.91]——2017-10-17——scoreDip()函数名称改为calcMIRAScore()——输出范围列aggregateMethyl():名称改为sumCoverage清晰——minReads参数名称(参数aggregateMethyl)改为minBaseCovPerBin清晰——sampleName列不再推荐aggregateMethyl输入,也不再aggregateMethyl返回sampleName列。这可以节省大量内存。# #(0.99.7)——2017-08-21 -删除binCount scoreDip论证()。现在scoreDip就从输入值的长度。包含“binCount”参数的函数调用将导致一个错误。——重大改变:改变用户界面的scoreDip()现在是一个输入数据。表被甲基化的值,而不是一个被甲基化值的向量。现在可以调用这个函数不使用数据。table syntax (e.g. the old sytax: binnedDT[, scoreDip(methylProp), by= .(sampleName, featureID). As a result of this change the name of the first parameter has been changed from "values" to "binnedDT". If existing code has the "values" parameter, an error will result. Code may need to be modified to reflect syntax change although the old syntax still works for now (but is not the preferred syntax and support for that syntax may be deprecated in the future).0 - Made "coverage" column optional for the input methylation data ("aggregateMethyl" function) - Made "methylCount" column optional for the input methylation data (to "aggregateMethyl" function)