版本变化1.15.5 (2019/06/11)- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - o依赖flowUtils,被flowWorkspace所取代。这也包括文件名淋巴细胞的变化。fcs为68983。fcs o包括版本变化1.15.4 (2019/05/17)- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - o修复bug时聚合文件不同的列订单o PlotNode修复bug,当有任何失败集群没有细胞。版本变化1.15.3 (2019/04/08)- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - o修复bug时映射一个fcs文件与不同的列(例如。没有“文件”列在聚合文件用于培训)o允许多个重复聚合AggregateFlowframe函数变化版本1.13.11 (2018/09/26)- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - o ReadInput功能现在还可以把一个矩阵作为输入。o使NewData函数的输入一般(现在可以采取任何输入ReadInput函数)。o包括TestOutliers函数检查细胞集群中心的平均距离(使用中位数和疯狂的措施),并返回多少细胞似乎进一步预期从集群中心。o固定错误,只有第一个file-specific补偿矩阵中考虑ReadInput函数。版本变化1.13.10(2018/09/18)- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -添加rownames MFI结果变化版本1.13.9 (2018/09/13)- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - keepOrder参数添加到AggregateFlowFrames函数。如果这是真的,随机子样品的细胞将命令以同样的方式,因为他们最初命令文件中。 Default = FALSE for backwards compatability. This will be especially useful if the whole file is selected in the subsample, in which case indices keep corresponding to the original ones. Also included the bugfix by Stu Blair to propagate the main parameter of the plotnumbers function to igraph. CHANGES IN VERSION 1.13.8 (2018/08/29) -------------------------------------- o added get_markers and get_channels functions for easier access o added PlotOverview2D function, which gives an overview of multiple PlotCluster2D plots. CHANGES IN VERSION 1.13.7 (2018/08/23) -------------------------------------- o Background circles scale with the actual node size o Possible to choose at which level warnings for bad mappings to cluster are generated (mean + x * sd), default changed from 3 to 4 o If more than 10 background values, split legend in multiple columns CHANGES IN VERSION 1.13.6 (2018/08/21) -------------------------------------- o Transposed the metaclusterMFI result!! CHANGES IN VERSION 1.13.2 (2018/08/20) -------------------------------------- o Added a MetaclusterCVs function to get coefficient of variation for the metaclusters CHANGES IN VERSION 1.13.1 (2018/04/09) -------------------------------------- o Added a warning when cells mapped with the NewData function seem further away from their cluster center then normal CHANGES IN VERSION 1.10.3 (2018/04/09) -------------------------------------- o Bugfix in PlotGroups CHANGES IN VERSION 1.10.1 (2017/01/03) -------------------------------------- o Updates to the PlotGroups function: - Changed the default from fold change (tresh) to p-value (p_tresh) - Make use of adjusted p-values o Added a check on the input format of the codes parameter in the SOM function CHANGES IN VERSION 1.1.0 (2015/07/06) -------------------------------------- NEW FEATURES o Cleaned up some code CHANGES IN VERSION 0.99.4 (2015/03/17) -------------------------------------- NEW FEATURES o Extra functionality to differentiate between groups of samples CHANGES IN VERSION 0.99.0 (2014/10/15) -------------------------------------- NEW FEATURES o First version of the package