ExperimentHub

DOI:10.18129/B9.bioc.ExperimentHub

This package is for version 3.10 of Bioconductor; for the stable, up-to-date release version, seeExperimentHub.

Client to access ExperimentHub resources

Bioconductor version: 3.10

This package provides a client for the Bioconductor ExperimentHub web resource. ExperimentHub provides a central location where curated data from experiments, publications or training courses can be accessed. Each resource has associated metadata, tags and date of modification. The client creates and manages a local cache of files retrieved enabling quick and reproducible access.

Author: Bioconductor Package Maintainer

Maintainer: Bioconductor Package Maintainer

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE)) install.packages("BiocManager") BiocManager::install("ExperimentHub")

For older versions of R, please refer to the appropriateBioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ExperimentHub")

HTML	R Script	Creating An ExperimentHub Package
HTML	R Script	ExperimentHub: Access the ExperimentHub Web Service
PDF		Reference Manual
Text		NEWS

Details

biocViews	DataImport,GUI,Infrastructure,Software,ThirdPartyClient
Version	1.12.0
In Bioconductor since	BioC 3.4 (R-3.3) (3.5 years)
License	Artistic-2.0
Depends	methods,BiocGenerics(>= 0.15.10),AnnotationHub(>= 2.17.9),BiocFileCache(>= 1.5.1)
Imports	utils,S4Vectors,BiocManager,旋度,rappdirs
LinkingTo
Suggests	knitr,BiocStyle
SystemRequirements
Enhances	ExperimentHubData
URL
Depends On Me	adductomicsR,allenpvc,alpineData,benchmarkfdrData2019,biscuiteerData,bodymapRat,brainImageRdata,CellMapperData,curatedAdipoChIP,curatedMetagenomicData,DMRcatedata,FlowSorted.Blood.EPIC,FlowSorted.CordBloodCombined.450k,HDCytoData,HumanAffyData,mcsurvdata,MetaGxBreast,MetaGxOvarian,MetaGxPancreas,muscData,NestLink,restfulSEData,RNAmodR.Data,SeqSQC,sesameData,tartare,tcgaWGBSData.hg19
Imports Me	adductData,chipseqDBData,CLLmethylation,CopyNeutralIMA,curatedTCGAData,depmap,DMRcate,DuoClustering2018,ENmix,ExperimentHubData,GSEABenchmarkeR,HarmonizedTCGAData,HCAData,HMP16SData,HMP2Data,MouseGastrulationData,PhyloProfile,PhyloProfileData,pwrEWAS.data,restfulSE,scRNAseq,signatureSearch,signatureSearchData,SingleR,TabulaMurisData,TENxBrainData,TENxBUSData,TENxPBMCData
Suggests Me	ANF,AnnotationHub,celaref,celarefData,CellMapper,DEqMS,GSE62944,HDF5Array,muscat,tissueTreg
Links To Me
Build Report

Package Archives

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Source Package	ExperimentHub_1.12.0.tar.gz
Windows Binary	ExperimentHub_1.12.0.zip
Mac OS X 10.11 (El Capitan)	ExperimentHub_1.12.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/ExperimentHub
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/ExperimentHub
Package Short Url	//www.anjoumacpherson.com/packages/ExperimentHub/
Package Downloads Report	Download Stats