| biocViews |
对齐,DataImport,DataRepresentation,遗传学,基础设施,SequenceMatching,测序,软件 |
| 版本 |
2.54.0 |
| Bioconductor自 |
BioC 1.6 (r - 2.1)或更早(> 15年) |
| 许可证 |
艺术- 2.0 |
| 取决于 |
R(> = 3.5.0)、方法BiocGenerics(> = 0.31.5),S4Vectors(> = 0.21.13),IRanges,XVector(> = 0.23.2) |
| 进口 |
图形,方法,属性,跑龙套 |
| 链接 |
S4Vectors,IRanges,XVector |
| 建议 |
BSgenome(> = 1.13.14),BSgenome.Celegans.UCSC.ce2(> = 1.3.11),BSgenome.Dmelanogaster.UCSC.dm3(> = 1.3.11),BSgenome.Hsapiens.UCSC.hg18,drosophila2probe,hgu95av2probe,hgu133aprobe,GenomicFeatures(> = 1.3.14),hgu95av2cdf,affy(> = 1.41.3),affydata(> = 1.11.5),RUnit |
| SystemRequirements |
|
| 增强了 |
Rmpi |
| URL |
|
| 取决于我 |
altcdfenvs,amplican,Basic4Cseq,大脑,BSgenome,chimeraviz,ChIPanalyser,ChIPpeakAnno,ChIPsim,切肉刀,食典委,CRISPRseek,解读,deepSNV,FDb.FANTOM4.promoters.hg19,GeneRegionScan,generegulation,GenomicAlignments,哥特,harbChIP,HelloRanges,hiReadsProcessor,iPAC,JASPAR2014,烤肉串,MethTargetedNGS,methVisual,minfi,Modstrings,MotifDb,motifRG,motifStack,msa,肌肉,NestLink,益生元,pcaGoPromoter,pd.ag,pd.aragene.1.0.st,pd.aragene.1.1.st,pd.ath1.121501,pd.barley1,pd.bovgene.1.0.st,pd.bovgene.1.1.st,pd.bovine,pd.bsubtilis,pd.cangene.1.0.st,pd.cangene.1.1.st,pd.canine,pd.canine.2,pd.celegans,pd.chicken,pd.chigene.1.0.st,pd.chigene.1.1.st,pd.chogene.2.0.st,pd.chogene.2.1.st,pd.citrus,pd.clariom.d.human,pd.clariom.s.human,pd.clariom.s.human.ht,pd.clariom.s.mouse,pd.clariom.s.mouse.ht,pd.clariom.s.rat,pd.clariom.s.rat.ht,pd.cotton,pd.cyngene.1.0.st,pd.cyngene.1.1.st,pd.cyrgene.1.0.st,pd.cyrgene.1.1.st,pd.cytogenetics.array,pd.drogene.1.0.st,pd.drogene.1.1.st,pd.drosgenome1,pd.drosophila.2,pd.e.coli.2,pd.ecoli,pd.ecoli.asv2,pd.elegene.1.0.st,pd.elegene.1.1.st,pd.equgene.1.0.st,pd.equgene.1.1.st,pd.felgene.1.0.st,pd.felgene.1.1.st,pd.fingene.1.0.st,pd.fingene.1.1.st,pd.genomewidesnp.5,pd.genomewidesnp.6,pd.guigene.1.0.st,pd.guigene.1.1.st,pd.hc.g110,pd.hg.focus,pd.hg.u133.plus.2,pd.hg.u133a,pd.hg.u133a.2,pd.hg.u133a.tag,pd.hg.u133b,pd.hg.u219,pd.hg.u95a,pd.hg.u95av2,pd.hg.u95b,pd.hg.u95c,pd.hg.u95d,pd.hg.u95e,pd.hg18.60mer.expr,pd.ht.hg.u133.plus.pm,pd.ht.hg.u133a,pd.ht.mg.430a,pd.hta.2.0,pd.hu6800,pd.huex.1.0.st.v2,pd.hugene.1.0.st.v1,pd.hugene.1.1.st.v1,pd.hugene.2.0.st,pd.hugene.2.1.st,pd.maize,pd.mapping250k.nsp,pd.mapping250k.sty,pd.mapping50k.hind240,pd.mapping50k.xba240,pd.margene.1.0.st,pd.margene.1.1.st,pd.medgene.1.0.st,pd.medgene.1.1.st,pd.medicago,pd.mg.u74a,pd.mg.u74av2,pd.mg.u74b,pd.mg.u74bv2,pd.mg.u74c,pd.mg.u74cv2,pd.mirna.1.0,pd.mirna.2.0,pd.mirna.3.0,pd.mirna.4.0,pd.moe430a,pd.moe430b,pd.moex.1.0.st.v1,pd.mogene.1.0.st.v1,pd.mogene.1.1.st.v1,pd.mogene.2.0.st,pd.mogene.2.1.st,pd.mouse430.2,pd.mouse430a.2,pd.mta.1.0,pd.mu11ksuba,pd.mu11ksubb,pd.nugo.hs1a520180,pd.nugo.mm1a520177,pd.ovigene.1.0.st,pd.ovigene.1.1.st,pd.pae.g1a,pd.plasmodium.anopheles,pd.poplar,pd.porcine,pd.porgene.1.0.st,pd.porgene.1.1.st,pd.rabgene.1.0.st,pd.rabgene.1.1.st,pd.rae230a,pd.rae230b,pd.raex.1.0.st.v1,pd.ragene.1.0.st.v1,pd.ragene.1.1.st.v1,pd.ragene.2.0.st,pd.ragene.2.1.st,pd.rat230.2,pd.rcngene.1.0.st,pd.rcngene.1.1.st,pd.rg.u34a,pd.rg.u34b,pd.rg.u34c,pd.rhegene.1.0.st,pd.rhegene.1.1.st,pd.rhesus,pd.rice,pd.rjpgene.1.0.st,pd.rjpgene.1.1.st,pd.rn.u34,pd.rta.1.0,pd.rusgene.1.0.st,pd.rusgene.1.1.st,pd.s.aureus,pd.soybean,pd.soygene.1.0.st,pd.soygene.1.1.st,pd.sugar.cane,pd.tomato,pd.u133.x3p,pd.vitis.vinifera,pd.wheat,pd.x.laevis.2,pd.x.tropicalis,pd.xenopus.laevis,pd.yeast.2,pd.yg.s98,pd.zebgene.1.0.st,pd.zebgene.1.1.st,pd.zebrafish,PGA,pqsfinder,PWMEnrich,qrqc,QSutils,R453Plus1Toolbox,R4RNA,REDseq,rGADEM,RiboProfiling,Roleswitch,rRDP,Rsamtools,RSVSim,sangerseqR,SCAN.UPC,scsR,SELEX,seqbias,测序,ShortRead,SICtools,ssviz,Structstrings,systemPipeR,topdownr,三层,waveTiling |
| 进口我 |
AffyCompatible,AllelicImbalance,高山,AneuFinder,AnnotationHubData,appreci8R,ArrayExpressHTS,AssessORF,ATACseqQC,BBCAnalyzer,BCRANK,bcSeq,击败,BgeeCall,BioSeqClass,biovizBase,brainflowprobes,分歧点,BSgenome,bsseq,BUMHMM,BUSpaRse,ChIPseqR,ChIPsim,chromVAR,circRNAprofiler,cn,CNVfilteR,cobindR,compEpiTools,consensusDE,警戒线,CrispRVariants,customProDB,dada2,dagLogo,decompTumor2Sig,diffHic,DNAshapeR,DominoEffect,easyRNASeq,EDASeq,ensembldb,ensemblVEP,esATAC,eudysbiome,EuPathDB,EventPointer,FastqCleaner,FDb.InfiniumMethylation.hg18,FDb.InfiniumMethylation.hg19,FindMyFriends,FourCSeq,GA4GHclient,gcapc,gcrma,genbankr,GeneRegionScan,GeneStructureTools,GenoGAM,genomation,GenomicAlignments,GenomicFeatures,GenomicScores,genphen,GenVisR,ggbio,GGtools,girafe,gmapR,GUIDEseq,Gviz,gwascat,h5vc,的热图,希尔达,HiTC,HTSeqGenie,icetea,IMMAN,感兴趣,InterMineR,电离,ipdDb,IsoformSwitchAnalyzeR,KEGGREST,Logolas,LowMACA,LymphoSeq,MACPET,MADSEQ,MatrixRider,联合化疗,MEDIPS,MEDME,metagenomeFeatures,methimpute,methVisual,methylPipe,微,MMDiff2,motifbreakR,motifcounter,motifmatchr,motifRG,MotIV,MTseeker,MutationalPatterns,ngsReports,诊断,oligoClasses,OmaDB,openPrimeR,ORFik,OTUbase,Pbase,pd.081229.hg18.promoter.medip.hx1,pd.2006.07.18.hg18.refseq.promoter,pd.2006.07.18.mm8.refseq.promoter,pd.2006.10.31.rn34.refseq.promoter,pd.atdschip.tiling,pd.charm.hg18.example,pd.feinberg.hg18.me.hx1,pd.feinberg.mm8.me.hx1,pd.mirna.3.1,pdInfoBuilder,PhyloProfile,PhyloProfileData,phyloseq,pipeFrame,podkat,聚酯,primirTSS,proBAMr,procoil,ProteomicsAnnotationHubData,PureCN,Pviz,qPLEXanalyzer,qrqc,qsea,QuasR,r3Cseq,ramwas,美国广播公司,Rcpi,REDseq,地区,REMP,Repitools,rGADEM,RNAmodR,RNAprobR,RNASeqR,Rqc,rtracklayer,scmeth,scoreInvHap,颈背,SeqArray,seqcombo,seqPattern,seqplots,SGSeq,签名者,SigsPack,SNPhood,soGGi,SomaticSignatures,SparseSignatures,分裂,sscu,StructuralVariantAnnotation,synapter,SynMut,TarSeqQC,TFBSTools,石棉水泥板,trena,tRNA,tRNAdbImport,tRNAscanImport,TVTB,tximeta,Ularcirc,universalmotif,VariantAnnotation,VariantExperiment,VariantFiltering,VariantTools,wavClusteR |
| 建议我 |
注释,AnnotationForge,AnnotationHub,强盗,BeadArrayUseCases,BiocGenerics,CINdex,CSAR,exomeCopy,GenomicFiles,GenomicRanges,genoset,GWASTools,maftools,methrix,methylumi,海市蜃楼,nuCpos,RNAmodR.AlkAnilineSeq,rpx,rTRM,SNPlocs.Hsapiens.dbSNP.20101109,SNPlocs.Hsapiens.dbSNP.20120608,SNPlocs.Hsapiens.dbSNP141.GRCh38,SNPlocs.Hsapiens.dbSNP142.GRCh37,SNPlocs.Hsapiens.dbSNP144.GRCh37,SNPlocs.Hsapiens.dbSNP144.GRCh38,SNPlocs.Hsapiens.dbSNP149.GRCh38,SNPlocs.Hsapiens.dbSNP150.GRCh38,SNPlocs.Hsapiens.dbSNP151.GRCh38,treeio,XtraSNPlocs.Hsapiens.dbSNP144.GRCh37,XtraSNPlocs.Hsapiens.dbSNP144.GRCh38,XVector |
| 我的链接 |
解读,烤肉串,MatrixRider,Rsamtools,ShortRead,三层,VariantAnnotation,VariantFiltering |
| 构建报告 |
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