# #试试http://如果https:// url不支持源(“//www.anjoumacpherson.com/biocLite.R”) biocLite (“IRanges”)

这个包是3.0版本Bioconductor;的稳定,最新的发布版本,请参阅IRanges。

基础设施用于操作间隔序列

Bioconductor版本:3.0

包提供了高效的底层和高度可重用的S4类存储范围的整数,RLE向量(行程长度编码),而且,更普遍的是,数据可以按顺序组织(正式定义为矢量对象),以及对这些矢量对象的看法。有效的类似类也提供了用于存储大的基本类的实例的集合。包中所有的类使用一致的命名和共享相同的富人和“向量API”尽可能一致。

作者:h .页,p . Aboyoun和m .劳伦斯

维修工:Bioconductor包维护者<维护者bioconductor.org >

安装

安装这个包,开始R和输入:

# #试试http://如果https:// url不支持源(“//www.anjoumacpherson.com/biocLite.R”) biocLite (“IRanges”)

文档

查看文档的版本这个包安装在您的系统,开始R和输入:

browseVignettes (“IRanges”)

PDF	R脚本	介绍IRanges
PDF	R脚本	Rle技巧和窍门
PDF		参考手册
文本		新闻

细节

biocViews	DataRepresentation,基础设施,软件
版本	2.0.1
Bioconductor自	BioC 2.3 (r - 2.8)(7.5年)
许可证	艺术- 2.0
取决于	R(> = 3.1.0)、方法、效用,统计数据,BiocGenerics(> = 0.11.3),S4Vectors(> = 0.2.5)
进口	stats4
链接	S4Vectors
建议	XVector,GenomicRanges,BSgenome.Celegans.UCSC.ce2,RUnit
SystemRequirements
增强了
URL
取决于我	AnnotationHub,BayesPeak,biomvRCNS,Biostrings,BiSeq,BSgenome,bsseq,bumphunter,咖啡馆,卡斯珀,CexoR,ChIPpeakAnno,chipseq,chroGPS,cn.mops,CSAR,customProDB,DASiR,deepSNV,DESeq2,DEXSeq,DirichletMultinomial,dna,epigenomix,exomeCopy,geneRxCluster,GenomeInfoDb,基因组,GenomicAlignments,GenomicFeatures,GenomicRanges,Genominator,girafe,groHMM,Gviz,harbChIP,HiTC,HMMcopy,htSeqTools,IdeoViz,LiebermanAidenHiC2009,methyAnalysis,MotifDb,motifRG,诊断,oneChannelGUI,OTUbase,pd.ag,pd.aragene.1.0.st,pd.aragene.1.1.st,pd.ath1.121501,pd.barley1,pd.bovgene.1.0.st,pd.bovgene.1.1.st,pd.bovine,pd.bsubtilis,pd.cangene.1.0.st,pd.cangene.1.1.st,pd.canine,pd.canine.2,pd.celegans,pd.chicken,pd.chigene.1.0.st,pd.chigene.1.1.st,pd.chogene.2.0.st,pd.chogene.2.1.st,pd.citrus,pd.cotton,pd.cyngene.1.0.st,pd.cyngene.1.1.st,pd.cyrgene.1.0.st,pd.cyrgene.1.1.st,pd.cytogenetics.array,pd.drogene.1.0.st,pd.drogene.1.1.st,pd.drosgenome1,pd.drosophila.2,pd.e.coli.2,pd.ecoli,pd.ecoli.asv2,pd.elegene.1.0.st,pd.elegene.1.1.st,pd.equgene.1.0.st,pd.equgene.1.1.st,pd.felgene.1.0.st,pd.felgene.1.1.st,pd.fingene.1.0.st,pd.fingene.1.1.st,pd.genomewidesnp.5,pd.genomewidesnp.6,pd.guigene.1.0.st,pd.guigene.1.1.st,pd.hc.g110,pd.hg.focus,pd.hg.u133.plus.2,pd.hg.u133a,pd.hg.u133a.2,pd.hg.u133a.tag,pd.hg.u133b,pd.hg.u219,pd.hg.u95a,pd.hg.u95av2,pd.hg.u95b,pd.hg.u95c,pd.hg.u95d,pd.hg.u95e,pd.ht.hg.u133.plus.pm,pd.ht.hg.u133a,pd.ht.mg.430a,pd.hta.2.0,pd.hu6800,pd.huex.1.0.st.v2,pd.hugene.1.0.st.v1,pd.hugene.1.1.st.v1,pd.hugene.2.0.st,pd.hugene.2.1.st,pd.maize,pd.mapping250k.nsp,pd.mapping250k.sty,pd.mapping50k.hind240,pd.mapping50k.xba240,pd.margene.1.0.st,pd.margene.1.1.st,pd.medgene.1.0.st,pd.medgene.1.1.st,pd.medicago,pd.mg.u74a,pd.mg.u74av2,pd.mg.u74b,pd.mg.u74bv2,pd.mg.u74c,pd.mg.u74cv2,pd.mirna.1.0,pd.mirna.2.0,pd.mirna.3.0,pd.mirna.4.0,pd.moe430a,pd.moe430b,pd.moex.1.0.st.v1,pd.mogene.1.0.st.v1,pd.mogene.1.1.st.v1,pd.mogene.2.1.st,pd.mouse430.2,pd.mouse430a.2,pd.mu11ksuba,pd.mu11ksubb,pd.ovigene.1.0.st,pd.ovigene.1.1.st,pd.pae.g1a,pd.plasmodium.anopheles,pd.poplar,pd.porcine,pd.porgene.1.0.st,pd.porgene.1.1.st,pd.rabgene.1.0.st,pd.rabgene.1.1.st,pd.rae230a,pd.rae230b,pd.raex.1.0.st.v1,pd.ragene.1.0.st.v1,pd.ragene.1.1.st.v1,pd.ragene.2.0.st,pd.ragene.2.1.st,pd.rat230.2,pd.rcngene.1.0.st,pd.rcngene.1.1.st,pd.rg.u34a,pd.rg.u34b,pd.rg.u34c,pd.rhegene.1.0.st,pd.rhegene.1.1.st,pd.rhesus,pd.rice,pd.rjpgene.1.0.st,pd.rjpgene.1.1.st,pd.rn.u34,pd.rusgene.1.0.st,pd.rusgene.1.1.st,pd.s.aureus,pd.soybean,pd.soygene.1.0.st,pd.soygene.1.1.st,pd.sugar.cane,pd.tomato,pd.u133.x3p,pd.vitis.vinifera,pd.wheat,pd.x.laevis.2,pd.x.tropicalis,pd.xenopus.laevis,pd.yeast.2,pd.yg.s98,pd.zebgene.1.0.st,pd.zebgene.1.1.st,pd.zebrafish,pepStat,平,proBAMr,PSICQUIC,RefNet,rfPred,rGADEM,RIPSeeker,rMAT,Rsamtools,scsR,segmentSeq,SGSeq,SNPlocs.Hsapiens.dbSNP.20090506,SNPlocs.Hsapiens.dbSNP.20100427,SNPlocs.Hsapiens.dbSNP.20101109,SNPlocs.Hsapiens.dbSNP.20110815,SNPlocs.Hsapiens.dbSNP.20111119,SNPlocs.Hsapiens.dbSNP.20120608,SNPlocs.Hsapiens.dbSNP141.GRCh38,SomatiCA,SplicingGraphs,TEQC,TitanCNA,triform,三层,TSSi,VariantTools,XVector
进口我	AllelicImbalance,annmap,ArrayExpressHTS,舞会礼服,BayesPeak,beadarray,Biostrings,biovizBase,BiSeq,BitSeq,BSgenome,篮球选手,cgdv17,魅力,chipenrich,chipenrich.data,ChIPQC,ChIPseeker,chipseq,ChIPseqR,ChIPsim,ChromHeatMap,切肉刀,cn,CNVrd2,cobindR,compEpiTools,copynumber,CoverageView,csaw,customProDB,解读,derfinder,derfinderHelper,derfinderPlot,DiffBind,DOQTL,easyRNASeq,EDASeq,facopy,fastseg,啪嗒啪嗒地响,flowQ,FunciSNP,gCMAPWeb,GenomicAlignments,GenomicFiles,GenomicInteractions,genoset,ggbio,GGtools,girafe,gmapR,哥特,gwascat,h5vc,HTSeqGenie,HTSFilter,intansv,M3D,MafDb.ALL.wgs.phase1.release.v3.20101123,MafDb.ALL.wgs.phase1.release.v3.20101123,MafDb.ESP6500SI.V2.SSA137.dbSNP138,MafDb.ESP6500SI.V2.SSA137.dbSNP138,MEDIPS,methVisual,methyAnalysis,methylPipe,MethylSeekR,methylumi,minfi,MinimumDistance,MMDiff,马赛克,motifRG,MotIV,MSnbase,NarrowPeaks,诊断,oligoClasses,Pbase,pd.081229.hg18.promoter.medip.hx1,pd.2006.07.18.hg18.refseq.promoter,pd.2006.07.18.mm8.refseq.promoter,pd.2006.10.31.rn34.refseq.promoter,pd.atdschip.tiling,pd.charm.hg18.example,pd.feinberg.hg18.me.hx1,pd.feinberg.mm8.me.hx1,pd.hg18.60mer.expr,pd.mirna.3.1,pd.mogene.2.0.st,pd.nugo.hs1a520180,pd.nugo.mm1a520177,pdInfoBuilder,phastCons100way.UCSC.hg19,phastCons100way.UCSC.hg19,图片,plethy,聚酯,prebs,Pviz,qpgraph,QuasR,R453Plus1Toolbox,Rariant,REDseq,regionReport,Repitools,ReportingTools,rGADEM,rMAT,rnaSeqMap,Rolexa,Rqc,rSFFreader,RSVSim,研制,rtracklayer,SCAN.UPC,SeqArray,seqplots,SeqVarTools,ShortRead,SNPchip,SNPlocs.Hsapiens.dbSNP.20090506,SNPlocs.Hsapiens.dbSNP.20100427,SNPlocs.Hsapiens.dbSNP.20101109,SNPlocs.Hsapiens.dbSNP.20110815,SNPlocs.Hsapiens.dbSNP.20111119,SNPlocs.Hsapiens.dbSNP.20120608,SNPlocs.Hsapiens.dbSNP141.GRCh38,SomatiCA,SomaticCancerAlterations,SomaticSignatures,连接工具,SplicingGraphs,TFBSTools,tracktables,TransView,triform,TSSi,VanillaICE,VariantAnnotation,VariantFiltering,wavClusteR,waveTiling,XVector
建议我	BaseSpaceR,BiocGenerics,HilbertVis,HilbertVisGUI,海市蜃楼,S4Vectors,斯坦,yeastRNASeq
构建报告

包档案

遵循bob 体育网址 指示在R会话中使用这个包。

包的来源	IRanges_2.0.1.tar.gz
Windows二进制	IRanges_2.0.1.zip(32位和64位)
Mac OS X 10.6 (Snow Leopard)	IRanges_2.0.1.tgz
Mac OS X 10.9(小牛)	IRanges_2.0.1.tgz
Subversion源	(用户名/密码:只读的)
Git源代码	https://github.com/bioconductor - mirror/iranges/tree/release - 3.0
包短Url	//www.anjoumacpherson.com/packages/IRanges/
包下载报告	下载数据