GenomicRanges
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这个包是3.0版本Bioconductor;的稳定,最新的发布版本,请参阅GenomicRanges。
表示和操纵基因间隔
Bioconductor版本:3.0
能够有效地表示和操纵基因注释和校准时发挥着核心作用,分析高通量测序数据(也称为门店数据)。包定义了通用的容器来存储基因组的间隔。专门的容器代表和操纵短对中定义一个参考基因组比对GenomicAlignments包。
作者:p . Aboyoun h .页面和m .劳伦斯
维修工:Bioconductor包维护者<维护者bioconductor.org >
从内部引用(R,回车引用(“GenomicRanges”)):
安装
安装这个包,开始R和输入:
# #试试http://如果https:// url不支持源(“//www.anjoumacpherson.com/biocLite.R”) biocLite (“GenomicRanges”)
文档
查看文档的版本这个包安装在您的系统,开始R和输入:
browseVignettes (“GenomicRanges”)
细节
| biocViews |
注释,报道,遗传学,GenomeAnnotation,基础设施,测序,软件 |
| 版本 |
1.18.4 |
| Bioconductor自 |
BioC 2.6 (r - 2.11)(6年) |
| 许可证 |
艺术- 2.0 |
| 取决于 |
R(> = 2.10),方法,BiocGenerics(> = 0.11.3),S4Vectors(> = 0.2.3),IRanges(> = 1.99.28),GenomeInfoDb(> = 1.1.20) |
| 进口 |
跑龙套,统计数据,XVector |
| 链接 |
S4Vectors,IRanges |
| 建议 |
AnnotationDbi(> = 1.21.1),AnnotationHub,BSgenome,BSgenome.Hsapiens.UCSC.hg19,BSgenome.Scerevisiae.UCSC.sacCer2,Biostrings(> = 2.25.3),Rsamtools(> = 1.13.53),GenomicAlignments,rtracklayer,KEGG.db,KEGGgraph,GenomicFeatures,TxDb.Dmelanogaster.UCSC.dm3.ensGene,TxDb.Hsapiens.UCSC.hg19.knownGene,TxDb.Athaliana.BioMart.plantsmart22,org.Sc.sgd.db,VariantAnnotation,刨边机,DESeq,DEXSeq,pasilla,pasillaBamSubset,RUnit,消化,BiocStyle |
| SystemRequirements |
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| 增强了 |
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| URL |
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| 取决于我 |
气道,AllelicImbalance,annmap,Basic4Cseq,baySeq,biomvRCNS,BiSeq,BSgenome,bsseq,bumphunter,咖啡馆,卡斯珀,cheung2010,嵌合体,ChIPQC,chipseq,cleanUpdTSeq,cn.mops,compEpiTools,COPDSexualDimorphism,CSAR,csaw,DASiR,deepSNV,DESeq2,DEXSeq,DiffBind,DMRforPairs,DREAM4,dsQTL,EatonEtAlChIPseq,ensemblVEP,epigenomix,epivizr,exomeCopy,fastseg,裂变,FourCSeq,geneRxCluster,基因组,GenomicAlignments,GenomicFeatures,GenomicFiles,GenomicTuples,genoset,GenoView,ggtut,gmapR,哥特,groHMM,Gviz,hiAnnotator,HiTC,htSeqTools,IdeoViz,intansv,工商管理硕士,metagene,methyAnalysis,methylPipe,minfi,MMDiff,OmicCircos,parathyroidSE,平,QuasR,r3Cseq,R453Plus1Toolbox,Rariant,Rcade,rfPred,riboSeqR,RIPSeeker,Rsamtools,RSVSim,rtracklayer,segmentSeq,seqbias,SGSeq,SigFuge,SNPlocs.Hsapiens.dbSNP.20090506,SNPlocs.Hsapiens.dbSNP.20100427,SNPlocs.Hsapiens.dbSNP.20101109,SNPlocs.Hsapiens.dbSNP.20110815,SNPlocs.Hsapiens.dbSNP.20111119,SNPlocs.Hsapiens.dbSNP.20120608,SNPlocs.Hsapiens.dbSNP141.GRCh38,SomatiCA,SomaticSignatures,SplicingGraphs,trackViewer,TransView,VanillaICE,VariantAnnotation,VariantTools,vtpnet,wavClusteR |
| 进口我 |
ALDEx2,AnnotationHub,ArrayExpressHTS,舞会礼服,beadarray,击败,biovizBase,BiSeq,BSgenome,篮球选手,CexoR,chipenrich,chipenrich.data,ChIPseeker,chipseq,ChIPseqR,cn,copynumber,COSMIC.67,CoverageView,customProDB,derfinder,derfinderPlot,dna,DOQTL,easyRNASeq,啪嗒啪嗒地响,FourCSeq,FunciSNP,GenomicAlignments,GenomicInteractions,GGBase,ggbio,GGtools,gwascat,h5vc,HTSeqGenie,HTSFilter,leeBamViews,光民,M3D,MafDb.ALL.wgs.phase1.release.v3.20101123,MafDb.ALL.wgs.phase1.release.v3.20101123,MafDb.ESP6500SI.V2.SSA137.dbSNP138,MafDb.ESP6500SI.V2.SSA137.dbSNP138,MEDIPS,methyAnalysis,MethylSeekR,methylumi,MinimumDistance,MMDiff,NarrowPeaks,诊断,oligoClasses,pepDat,pepStat,phastCons100way.UCSC.hg19,phastCons100way.UCSC.hg19,图片,prebs,proBAMr,Pviz,qpgraph,QuasR,regionReport,Repitools,rnaSeqMap,咆哮,SeqArray,seqplots,SeqVarTools,ShortRead,simulatorZ,SNPchip,SNPlocs.Hsapiens.dbSNP.20090506,SNPlocs.Hsapiens.dbSNP.20100427,SNPlocs.Hsapiens.dbSNP.20101109,SNPlocs.Hsapiens.dbSNP.20110815,SNPlocs.Hsapiens.dbSNP.20111119,SNPlocs.Hsapiens.dbSNP.20120608,SNPlocs.Hsapiens.dbSNP141.GRCh38,SomatiCA,SomaticCancerAlterations,连接工具,SplicingGraphs,TFBSTools,ToPASeq,tracktables,三层,VariantFiltering,waveTiling |
| 建议我 |
BeadArrayUseCases,BiocGenerics,BiocParallel,腰带,DMRcate,GenomeInfoDb,interactiveDisplay,IRanges,metaseqR,海市蜃楼,NarrowPeaks,NGScopy,SeqGSEA,斯坦 |
| 构建报告 |
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包档案
遵循bob 体育网址
指示在R会话中使用这个包。
