AnnotationDbi

标注数据库接口

Bioconductor版本:2.7

为使用SQLite数据存储的注释数据包提供用户界面和数据库连接代码。

作者:Herve Pages, Marc Carlson, Seth Falcon，李年华

维护者:Biocore Team c/o BioC用户列表

要安装这个包，启动R并输入:

源(“//www.anjoumacpherson.com/biocLite.R”)biocLite(“AnnotationDbi”)

要在出版物中引用此包，请输入R并输入:

引用(“AnnotationDbi”)

文档

PDF	R脚本	AnnotationDbi:如何使用“。db”注释包
PDF	R脚本	使用新的数据库模式创建注释包
PDF	R脚本	创建探测包
PDF	R脚本	SQLForge:使用标准数据库模式创建新注释包的简单方法。
PDF		参考手册

细节

biocViews	注释，基础设施
取决于	R(>= 2.7.0)，方法，utils，Biobase(> = 1.17.0)
进口	方法,跑龙套,Biobase，DBI，RSQLite
建议	DBI(> = 0.2 4),RSQLite(> = 0.6 4),hgu95av2.db，GO.db，human.db0，hgu95av2cdf，affy，KEGG.db
系统需求
许可证	艺术- 2.0
URL
全靠我	adme16cod.db，ag.db，agprobe，注释，anopheles.db0，arabidopsis.db0，ath1121501.db，ath1121501probe，吸引，barley1probe，bovine.db，bovine.db0，bovineprobe，bsubtilisprobe，canine.db，canine.db0，canine2.db，canine2probe，canineprobe，类别，celegans.db，celegansprobe，chicken.db，chicken.db0，chickenprobe，chimp.db0，ChromHeatMap，citrusprobe，cottonprobe，DO.db，drosgenome1.db，drosgenome1probe，drosophila2.db，drosophila2probe，ecoli2.db，ecoli2probe，ecoliasv2probe，ecoliK12.db0，ecoliprobe，ecoliSakai.db0，eisa，fly.db0，gahgu133a.db，gahgu133aprobe，gahgu133b.db，gahgu133bprobe，gahgu133plus2.db，gahgu133plus2probe，gahgu95av2.db，gahgu95av2probe，gahgu95b.db，gahgu95bprobe，gahgu95c.db，gahgu95cprobe，gahgu95d.db，gahgu95dprobe，gahgu95e.db，gahgu95eprobe，gene2pathway，GGdata，GGHumanMethCancerPanelv1.db，GO.db，goProfiles，GOSemSim，h10kcod.db，h20kcod.db，hcg110.db，hcg110probe，hgfocus.db，hgfocusprobe，hgu133a.db，hgu133a2.db，hgu133a2probe，hgu133aprobe，hgu133atagprobe，hgu133b.db，hgu133bprobe，hgu133plus2.db，hgu133plus2probe，hgu219.db，hgu219probe，hgu95a.db，hgu95aprobe，hgu95av2.db，hgu95av2probe，hgu95b.db，hgu95bprobe，hgu95c.db，hgu95cprobe，hgu95d.db，hgu95dprobe，hgu95e.db，hgu95eprobe，hguatlas13k.db，hgubeta7.db，hguDKFZ31.db，hgug4100a.db，hgug4101a.db，hgug4110b.db，hgug4111a.db，hgug4112a.db，hguqiagenv3.db，hi16cod.db，hom.At.inp.db，hom.Ce.inp.db，hom.Dm.inp.db，hom.Dr.inp.db，hom.Hs.inp.db，hom.Mm.inp.db，hom.Rn.inp.db，hom.Sc.inp.db，hs25kresogen.db，Hs6UG171.db，HsAgilentDesign026652.db，hthgu133a.db，hthgu133aprobe，hthgu133b.db，hthgu133bprobe，hthgu133pluspmprobe，htmg430aprobe，htmg430bprobe，htmg430pmprobe，htrat230pmprobe，htratfocusprobe，hu35ksuba.db，hu35ksubaprobe，hu35ksubb.db，hu35ksubbprobe，hu35ksubc.db，hu35ksubcprobe，hu35ksubd.db，hu35ksubdprobe，hu6800.db，hu6800probe，HuExExonProbesetLocationHg18，HuExExonProbesetLocationHg19，hugene10stprobeset.db，hugene10sttranscriptcluster.db，hugene10stv1probe，hugene11stprobeset.db，hugene11sttranscriptcluster.db，human.db0，HuO22.db，hwgcod.db，illuminaHumanDASLBeadID.db，IlluminaHumanMethylation27k.db，illuminaHumanv1.db，illuminaHumanv1BeadID.db，illuminaHumanv2.db，illuminaHumanv2BeadID.db，illuminaHumanv3.db，illuminaHumanv3BeadID.db，illuminaHumanv4.db，illuminaHumanv4BeadID.db，illuminaMousev1.db，illuminaMousev1BeadID.db，illuminaMousev1p1.db，illuminaMousev1p1BeadID.db，illuminaMousev2.db，illuminaMousev2BeadID.db，illuminaRatv1.db，illuminaRatv1BeadID.db，indac.db，JazaeriMetaData.db，KEGG.db，LAPOINTE.db，lumiHumanAll.db，lumiHumanIDMapping，lumiMouseAll.db，lumiMouseIDMapping，lumiRatAll.db，lumiRatIDMapping，m10kcod.db，m20kcod.db，maizeprobe，malaria.db0，medicagoprobe，mgu74a.db，mgu74aprobe，mgu74av2.db，mgu74av2probe，mgu74b.db，mgu74bprobe，mgu74bv2.db，mgu74bv2probe，mgu74c.db，mgu74cprobe，mgu74cv2.db，mgu74cv2probe，mguatlas5k.db，mgug4104a.db，mgug4120a.db，mgug4121a.db，mgug4122a.db，mi16cod.db，mirbase.db，mirna10probe，mm24kresogen.db，MmAgilentDesign026655.db，moe430a.db，moe430aprobe，moe430b.db，moe430bprobe，MoExExonProbesetLocation，mogene10stprobeset.db，mogene10sttranscriptcluster.db，mogene10stv1probe，mogene11stprobeset.db，mogene11sttranscriptcluster.db，mouse.db0，mouse4302.db，mouse4302probe，mouse430a2.db，mouse430a2probe，mpedbarray.db，mu11ksuba.db，mu11ksubaprobe，mu11ksubb.db，mu11ksubbprobe，Mu15v1.db，mu19ksuba.db，mu19ksubb.db，mu19ksubc.db，Mu22v3.db，mwgcod.db，Norway981.db，nugohs1a520180.db，nugohs1a520180probe，nugomm1a520177.db，nugomm1a520177probe，oneChannelGUI，ontoTools，OperonHumanV3.db，org.Ag.eg.db，org.At.tair.db，org.Bt.eg.db，org.Ce.eg.db，org.Cf.eg.db，org.Dm.eg.db，org.Dr.eg.db，org.EcK12.eg.db，org.EcSakai.eg.db，org.Gg.eg.db，org.Hs.eg.db，org.Hs.ipi.db，org.Mm.eg.db，org.Mmu.eg.db，org.Pf.plasmo.db，org.Pt.eg.db，org.Rn.eg.db，org.Sc.sgd.db，org.Sco.eg.db，org.Ss.eg.db，org.Xl.eg.db，paeg1aprobe，PAnnBuilder，PartheenMetaData.db，pathRender，pedbarrayv10.db，pedbarrayv9.db，PFAM.db，PGSEA，pig.db0，plasmodiumanophelesprobe，POCRCannotation.db，poplarprobe，porcine.db，porcineprobe，r10kcod.db，rae230a.db，rae230aprobe，rae230b.db，rae230bprobe，RaExExonProbesetLocation，ragene10stprobeset.db，ragene10sttranscriptcluster.db，ragene10stv1probe，ragene11stprobeset.db，ragene11sttranscriptcluster.db，rat.db0，rat2302.db，rat2302probe，rattoxfxprobe，Resourcerer，rgu34a.db，rgu34aprobe，rgu34b.db，rgu34bprobe，rgu34c.db，rgu34cprobe，rguatlas4k.db，rgug4105a.db，rgug4130a.db，rgug4131a.db，rhesus.db0，rhesusprobe，ri16cod.db，riceprobe，RnAgilentDesign028282.db，rnu34.db，rnu34probe，Roberts2005Annotation.db，RpsiXML，rtu34.db，rtu34probe，rwgcod.db，saureusprobe，SHDZ.db，soybeanprobe，sugarcaneprobe，targetscan.Hs.eg.db，targetscan.Mm.eg.db，test3probe，tomatoprobe，topGO，u133x3p.db，u133x3pprobe，vitisviniferaprobe，wheatprobe，worm.db0，xenopus.db0，xenopuslaevisprobe，xlaevis.db，xlaevis2probe，xtropicalisprobe，yeast.db0，yeast2.db，yeast2probe，ygs98.db，ygs98probe，zebrafish.db，zebrafish.db0，zebrafishprobe
进口我	adme16cod.db，adSplit，affycoretools，ag.db，annaffy，注释，anopheles.db0，arabidopsis.db0，ath1121501.db，吸引，生命网络，bovine.db，bovine.db0，canine.db，canine.db0，canine2.db，类别，celegans.db，chicken.db，chicken.db0，chimp.db0，ChromHeatMap，CoCiteStats，DO.db，domainsignatures，drosgenome1.db，drosophila2.db，ecoli2.db，ecoliK12.db0，ecoliSakai.db0，ExpressionView，fly.db0，gahgu133a.db，gahgu133b.db，gahgu133plus2.db，gahgu95av2.db，gahgu95b.db，gahgu95c.db，gahgu95d.db，gahgu95e.db，genefilter，geneplotter，GGBase，GGHumanMethCancerPanelv1.db，GGtools，GlobalAncova，globaltest，GO.db，goseq，GOstats，GSEABase，h10kcod.db，h20kcod.db，hcg110.db，hgfocus.db，hgu133a.db，hgu133a2.db，hgu133b.db，hgu133plus2.db，hgu219.db，hgu95a.db，hgu95av2.db，hgu95b.db，hgu95c.db，hgu95d.db，hgu95e.db，hguatlas13k.db，hgubeta7.db，hguDKFZ31.db，hgug4100a.db，hgug4101a.db，hgug4110b.db，hgug4111a.db，hgug4112a.db，hguqiagenv3.db，hi16cod.db，hom.At.inp.db，hom.Ce.inp.db，hom.Dm.inp.db，hom.Dr.inp.db，hom.Hs.inp.db，hom.Mm.inp.db，hom.Rn.inp.db，hom.Sc.inp.db，hs25kresogen.db，Hs6UG171.db，HsAgilentDesign026652.db，hthgu133a.db，hthgu133b.db，HTSanalyzeR，hu35ksuba.db，hu35ksubb.db，hu35ksubc.db，hu35ksubd.db，hu6800.db，hugene10stprobeset.db，hugene10sttranscriptcluster.db，hugene11stprobeset.db，hugene11sttranscriptcluster.db，human.db0，HuO22.db，hwgcod.db，illuminaHumanDASLBeadID.db，IlluminaHumanMethylation27k.db，illuminaHumanv1.db，illuminaHumanv1BeadID.db，illuminaHumanv2.db，illuminaHumanv2BeadID.db，illuminaHumanv3.db，illuminaHumanv3BeadID.db，illuminaHumanv4.db，illuminaHumanv4BeadID.db，illuminaMousev1.db，illuminaMousev1BeadID.db，illuminaMousev1p1.db，illuminaMousev1p1BeadID.db，illuminaMousev2.db，illuminaMousev2BeadID.db，illuminaRatv1.db，illuminaRatv1BeadID.db，indac.db，JazaeriMetaData.db，KEGG.db，keggorthology，LAPOINTE.db，光民，lumiHumanAll.db，lumiHumanIDMapping，lumiMouseAll.db，lumiMouseIDMapping，lumiRatAll.db，lumiRatIDMapping，m10kcod.db，m20kcod.db，malaria.db0，mgu74a.db，mgu74av2.db，mgu74b.db，mgu74bv2.db，mgu74c.db，mgu74cv2.db，mguatlas5k.db，mgug4104a.db，mgug4120a.db，mgug4121a.db，mgug4122a.db，mi16cod.db，mirbase.db，mm24kresogen.db，MmAgilentDesign026655.db，moe430a.db，moe430b.db，mogene10stprobeset.db，mogene10sttranscriptcluster.db，mogene11stprobeset.db，mogene11sttranscriptcluster.db，mouse.db0，mouse4302.db，mouse430a2.db，mpedbarray.db，mu11ksuba.db，mu11ksubb.db，Mu15v1.db，mu19ksuba.db，mu19ksubb.db，mu19ksubc.db，Mu22v3.db，mwgcod.db，Norway981.db，nugohs1a520180.db，nugomm1a520177.db，OperonHumanV3.db，org.Ag.eg.db，org.At.tair.db，org.Bt.eg.db，org.Ce.eg.db，org.Cf.eg.db，org.Dm.eg.db，org.Dr.eg.db，org.EcK12.eg.db，org.EcSakai.eg.db，org.Gg.eg.db，org.Hs.eg.db，org.Hs.ipi.db，org.Mm.eg.db，org.Mmu.eg.db，org.Pf.plasmo.db，org.Pt.eg.db，org.Rn.eg.db，org.Sc.sgd.db，org.Sco.eg.db，org.Ss.eg.db，org.Xl.eg.db，PAnnBuilder，PartheenMetaData.db，PatientGeneSets，PCpheno，pedbarrayv10.db，pedbarrayv9.db，PFAM.db，pig.db0，POCRCannotation.db，porcine.db，qpgraph，r10kcod.db，rae230a.db，rae230b.db，ragene10stprobeset.db，ragene10sttranscriptcluster.db，ragene11stprobeset.db，ragene11sttranscriptcluster.db，rat.db0，rat2302.db，rgu34a.db，rgu34b.db，rgu34c.db，rguatlas4k.db，rgug4105a.db，rgug4130a.db，rgug4131a.db，rhesus.db0，ri16cod.db，RmiR.Hs.miRNA，RmiR.hsa，RnAgilentDesign028282.db，rnu34.db，Roberts2005Annotation.db，rtu34.db，rwgcod.db，安全，ScISI，SHDZ.db，SLGI，targetscan.Hs.eg.db，targetscan.Mm.eg.db，tigre，topGO，u133x3p.db，worm.db0，xenopus.db0，xlaevis.db，yeast.db0，yeast2.db，ygs98.db，zebrafish.db，zebrafish.db0
建议我	BiocCaseStudies，ExpressionView，GeneAnswers，GeneRegionScan，sigPathway
版本	1.12.1
自	生物导体2.1 (R-2.6)

包下载

包的来源	AnnotationDbi_1.12.1.tar.gz
Windows二进制	AnnotationDbi_1.12.1.zip(32位和64位)
MacOS 10.5 (Leopard)二进制文件	AnnotationDbi_1.12.0.tgz
软件包下载报告	下载数据