GenomeGraphs

Plotting genomic information from Ensembl

Bioconductor version: 2.6

Genomic data analyses requires integrated visualization of known genomic information and new experimental data. GenomeGraphs uses the biomaRt package to perform live annotation queries to Ensembl and translates this to e.g. gene/transcript structures in viewports of the grid graphics package. This results in genomic information plotted together with your data. Another strength of GenomeGraphs is to plot different data types such as array CGH, gene expression, sequencing and other data, together in one plot using the same genome coordinate system.

Author: Steffen Durinck , James Bullard

Maintainer: Steffen Durinck

To install this package, start R and enter:

source("//www.anjoumacpherson.com/biocLite.R") biocLite("GenomeGraphs")

To cite this package in a publication, start R and enter:

citation("GenomeGraphs")

Documentation

PDF	R Script	The GenomeGraphs users guide
PDF		Reference Manual

Details

biocViews	Visualization,Microarray
Depends	methods,biomaRt, grid
Imports
Suggests
System Requirements
License	Artistic-2.0
URL
Depends On Me	Genominator
Imports Me
Suggests Me	leeBamViews,oneChannelGUI,rMAT
Version	1.8.0
Since	Bioconductor 2.2 (R-2.7)

Package Downloads

Package Source	GenomeGraphs_1.8.0.tar.gz
Windows Binary	GenomeGraphs_1.8.0.zip(32- & 64-bit)
MacOS 10.5 (Leopard) binary	GenomeGraphs_1.8.0.tgz
Package Downloads Report	Download Stats