版本2.1.3 ------------------------- -的变化修复了无标签实验的groupComparison。-自动生成txt格式的进度报告-为groupComparison和dataProcessPlots添加进度消息功能。2.1.1版本的变化 ------------------------- - 在条件图:1修复bug。对于基于标签的:匹配引用和内生2。无标记:当每组有一个观察值时，SD=NA。让它为零。-修复了热图和比较图中的错误:删除NA结果绘图-修复了标签自由组的错误比较:如何在make.contrast.free中获得每组不相等的数量的subject_nested参数-修复了组量化中的错误:make.contrast.group.quantification修复了subject_nested参数在版本1.99.1 ------------------------- -修复了几个注释，增加了。rbuildignore，压缩小插图- TODO:删除了警告-1 -增加了有效性检查时返回MSnSet -使用继承/is。用于类测试- TODO修复if条件语法CHANGES IN VERSION 1.99.0 ------------------------- o提高计算组比较和量化的效率<2012-12-21> o添加。rnw <2012-12-03> o更新groupcompare用于无标签时间过程实验，具有单一特征和有或没有技术重复<2013-04-08> o添加保存QQ图和残差图的选项，以便在groupComparison功能中检查正常假设。<2013-04-08> o对所有plot使用ggplot2包。 <2013-07-11> o fix bug for volcano plot : different color labeling <2013-07-12> o add power plot in sample size calculation plot <2013-07-12> o add 'interference=TRUE or FALSE' in sample size calculation <2013-07-15> o add 'legend.size=7'for size of feature name legends in dataProcessPlots <2013-07-23> o add 'text.angle=0'for angle of condition labeling in dataProcessPlots <2013-07-23> o fix bug for quantification : when there are missing values in endogenous intensities, but values in reference intensities. <2013-07-24> o fix bug for groupComparison : when there are missing values in endogenous intensities, but values in reference intensities, .make.constast.based or .free sub function were changed. <2013-07-25> o two function for transformation between required input for MSstats and MSnSet class <2013-09-04> o flexibility for visualization : save as pdf files or show in window with selected proteins or all proteins. <2013-09-04> o handle unequal variance for feature in groupComparison function with featureVar=TRUE <2013-09-04> o Add 'missing.action' for impute missing values in group comparison stage. <2013-09-20>