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(Rfn.fragmentlength,ChIPQCexperiment.Rdash.method) 633 0 R (Rfn.fragmentlength,ChIPQCsample.Rdash.method) 634 0 R (Rfn.fragmentlength.Rdash.methods) 632 0 R (Rfn.fragmentlength.Rdash.methods.1) 50 0 R] /Limits [(Rfn.flagtagcounts.Rdash.methods.1) (Rfn.fragmentlength.Rdash.methods.1)] >> endobj 1338 0 obj << /Names [(Rfn.frip) 450 0 R (Rfn.frip,ChIPQCexperiment.Rdash.method) 641 0 R (Rfn.frip,ChIPQCsample.Rdash.method) 642 0 R (Rfn.frip.Rdash.methods) 640 0 R (Rfn.frip.Rdash.methods.1) 54 0 R (Rfn.ggplot2) 706 0 R] /Limits [(Rfn.frip) (Rfn.ggplot2)] >> endobj 1339 0 obj << /Names [(Rfn.list.Rdash.class) 406 0 R (Rfn.mapped) 451 0 R (Rfn.mapped,ChIPQCexperiment.Rdash.method) 655 0 R (Rfn.mapped,ChIPQCsample.Rdash.method) 656 0 R (Rfn.mapped.Rdash.methods) 654 0 R (Rfn.mapped.Rdash.methods.1) 58 0 R] /Limits [(Rfn.list.Rdash.class) (Rfn.mapped.Rdash.methods.1)] >> endobj 1340 0 obj << /Names [(Rfn.peaks) 456 0 R (Rfn.peaks,ChIPQCexperiment.Rdash.method) 680 0 R (Rfn.peaks,ChIPQCsample.Rdash.method) 681 0 R (Rfn.peaks.Rdash.methods) 679 0 R (Rfn.peaks.Rdash.methods.1) 66 0 R (Rfn.plotCC) 465 0 R] /Limits [(Rfn.peaks) (Rfn.plotCC)] >> endobj 1341 0 obj << /Names [(Rfn.plotCC,ChIPQCexperiment.Rdash.method) 698 0 R (Rfn.plotCC,ChIPQCsample.Rdash.method) 699 0 R (Rfn.plotCC.Rdash.methods) 697 0 R (Rfn.plotCC.Rdash.methods.1) 70 0 R (Rfn.plotCorHeatmap) 471 0 R (Rfn.plotCorHeatmap,ChIPQCexperiment.Rdash.method) 718 0 R] /Limits [(Rfn.plotCC,ChIPQCexperiment.Rdash.method) (Rfn.plotCorHeatmap,ChIPQCexperiment.Rdash.method)] >> endobj 1342 0 obj << /Names [(Rfn.plotCorHeatmap.Rdash.methods) 717 0 R (Rfn.plotCorHeatmap.Rdash.methods.1) 74 0 R (Rfn.plotCoverageHist) 466 0 R (Rfn.plotCoverageHist,ChIPQCexperiment.Rdash.method) 736 0 R (Rfn.plotCoverageHist,ChIPQCsample.Rdash.method) 737 0 R (Rfn.plotCoverageHist.Rdash.methods) 735 0 R] /Limits [(Rfn.plotCorHeatmap.Rdash.methods) (Rfn.plotCoverageHist.Rdash.methods)] >> endobj 1343 0 obj << /Names [(Rfn.plotCoverageHist.Rdash.methods.1) 78 0 R (Rfn.plotFribl) 467 0 R (Rfn.plotFribl,ChIPQCexperiment.Rdash.method) 745 0 R (Rfn.plotFribl,ChIPQCsample.Rdash.method) 746 0 R (Rfn.plotFribl.Rdash.methods) 744 0 R (Rfn.plotFribl.Rdash.methods.1) 82 0 R] /Limits [(Rfn.plotCoverageHist.Rdash.methods.1) (Rfn.plotFribl.Rdash.methods.1)] >> endobj 1344 0 obj << /Names [(Rfn.plotFrip) 764 0 R (Rfn.plotFrip,ChIPQCexperiment.Rdash.method) 765 0 R (Rfn.plotFrip,ChIPQCsample.Rdash.method) 766 0 R (Rfn.plotFrip.Rdash.methods) 763 0 R (Rfn.plotFrip.Rdash.methods.1) 86 0 R (Rfn.plotPeakProfile) 468 0 R] /Limits [(Rfn.plotFrip) (Rfn.plotPeakProfile)] >> endobj 1345 0 obj << /Names [(Rfn.plotPeakProfile,ChIPQCexperiment.Rdash.method) 782 0 R (Rfn.plotPeakProfile,ChIPQCsample.Rdash.method) 783 0 R (Rfn.plotPeakProfile.Rdash.methods) 781 0 R (Rfn.plotPeakProfile.Rdash.methods.1) 90 0 R (Rfn.plotPrincomp) 472 0 R (Rfn.plotPrincomp,ChIPQCexperiment.Rdash.method) 791 0 R] /Limits [(Rfn.plotPeakProfile,ChIPQCexperiment.Rdash.method) (Rfn.plotPrincomp,ChIPQCexperiment.Rdash.method)] >> endobj 1346 0 obj << /Names [(Rfn.plotPrincomp.Rdash.methods) 790 0 R (Rfn.plotPrincomp.Rdash.methods.1) 94 0 R (Rfn.plotRap) 469 0 R (Rfn.plotRap,ChIPQCexperiment.Rdash.method) 813 0 R (Rfn.plotRap,ChIPQCsample.Rdash.method) 814 0 R (Rfn.plotRap.Rdash.methods) 812 0 R] /Limits [(Rfn.plotPrincomp.Rdash.methods) (Rfn.plotRap.Rdash.methods)] >> endobj 1347 0 obj << /Names [(Rfn.plotRap.Rdash.methods.1) 98 0 R (Rfn.plotRegi) 470 0 R (Rfn.plotRegi,ChIPQCexperiment.Rdash.method) 830 0 R (Rfn.plotRegi,ChIPQCsample.Rdash.method) 831 0 R (Rfn.plotRegi.Rdash.methods) 829 0 R (Rfn.plotRegi.Rdash.methods.1) 102 0 R] /Limits [(Rfn.plotRap.Rdash.methods.1) (Rfn.plotRegi.Rdash.methods.1)] >> endobj 1348 0 obj << /Names [(Rfn.plotSSD) 839 0 R (Rfn.plotSSD,ChIPQCexperiment.Rdash.method) 840 0 R (Rfn.plotSSD,ChIPQCsample.Rdash.method) 841 0 R (Rfn.plotSSD.Rdash.methods) 838 0 R (Rfn.plotSSD.Rdash.methods.1) 106 0 R (Rfn.readlength) 457 0 R] /Limits [(Rfn.plotSSD) (Rfn.readlength)] >> endobj 1349 0 obj << /Names [(Rfn.readlength,ChIPQCexperiment.Rdash.method) 954 0 R (Rfn.readlength,ChIPQCsample.Rdash.method) 955 0 R (Rfn.readlength.Rdash.methods) 953 0 R (Rfn.readlength.Rdash.methods.1) 134 0 R (Rfn.reads) 452 0 R (Rfn.reads,ChIPQCexperiment.Rdash.method) 995 0 R] /Limits [(Rfn.readlength,ChIPQCexperiment.Rdash.method) (Rfn.reads,ChIPQCexperiment.Rdash.method)] >> endobj 1350 0 obj << /Names [(Rfn.reads,ChIPQCsample.Rdash.method) 996 0 R (Rfn.reads.Rdash.methods) 994 0 R (Rfn.reads.Rdash.methods.1) 146 0 R (Rfn.regi) 464 0 R (Rfn.regi,ChIPQCexperiment.Rdash.method) 1009 0 R (Rfn.regi,ChIPQCsample.Rdash.method) 1010 0 R] /Limits [(Rfn.reads,ChIPQCsample.Rdash.method) (Rfn.regi,ChIPQCsample.Rdash.method)] >> endobj 1351 0 obj << /Names [(Rfn.regi.Rdash.methods) 1008 0 R (Rfn.regi.Rdash.methods.1) 150 0 R (Rfn.register) 351 0 R (Rfn.ribl) 460 0 R (Rfn.ribl,ChIPQCexperiment.Rdash.method) 1032 0 R (Rfn.ribl,ChIPQCsample.Rdash.method) 1033 0 R] /Limits [(Rfn.regi.Rdash.methods) (Rfn.ribl,ChIPQCsample.Rdash.method)] >> endobj 1352 0 obj << /Names [(Rfn.ribl.Rdash.methods) 1031 0 R (Rfn.ribl.Rdash.methods.1) 158 0 R (Rfn.rip) 461 0 R (Rfn.rip,ChIPQCexperiment.Rdash.method) 1049 0 R (Rfn.rip,ChIPQCsample.Rdash.method) 1050 0 R (Rfn.rip.Rdash.methods) 1048 0 R] /Limits [(Rfn.ribl.Rdash.methods) (Rfn.rip.Rdash.methods)] >> endobj 1353 0 obj << /Names [(Rfn.rip.Rdash.methods.1) 162 0 R (Rfn.show) 462 0 R (Rfn.show,ChIPQCexperiment.Rdash.method) 401 0 R (Rfn.show,ChIPQCsample.Rdash.method) 503 0 R (Rfn.ssd) 463 0 R (Rfn.ssd,ChIPQCexperiment.Rdash.method) 1065 0 R] /Limits [(Rfn.rip.Rdash.methods.1) (Rfn.ssd,ChIPQCexperiment.Rdash.method)] >> endobj 1354 0 obj << /Names [(Rfn.ssd,ChIPQCsample.Rdash.method) 1066 0 R (Rfn.ssd.Rdash.methods) 1064 0 R (Rfn.ssd.Rdash.methods.1) 166 0 R (Rfn.tamoxifen) 376 0 R (Rfn.tamoxifen.Rul.QC) 370 0 R (chapter*.1) 187 0 R] /Limits [(Rfn.ssd,ChIPQCsample.Rdash.method) (chapter*.1)] >> endobj 1355 0 obj << /Names [(index.0) 170 0 R (page.1) 185 0 R (page.10) 241 0 R (page.11) 242 0 R (page.12) 518 0 R (page.13) 548 0 R] /Limits [(index.0) (page.13)] >> endobj 1356 0 obj << /Names [(page.14) 243 0 R (page.15) 244 0 R (page.16) 245 0 R (page.17) 246 0 R (page.18) 247 0 R (page.19) 248 0 R] /Limits [(page.14) (page.19)] >> endobj 1357 0 obj << /Names [(page.2) 194 0 R (page.20) 249 0 R (page.21) 250 0 R (page.22) 251 0 R (page.23) 252 0 R (page.24) 253 0 R] /Limits [(page.2) (page.24)] >> endobj 1358 0 obj << /Names [(page.25) 254 0 R (page.26) 255 0 R (page.27) 256 0 R (page.28) 257 0 R (page.29) 258 0 R (page.3) 195 0 R] /Limits [(page.25) (page.3)] >> endobj 1359 0 obj << /Names [(page.30) 259 0 R (page.31) 260 0 R (page.32) 261 0 R (page.33) 262 0 R (page.34) 263 0 R (page.35) 264 0 R] /Limits [(page.30) (page.35)] >> endobj 1360 0 obj << /Names [(page.36) 265 0 R (page.37) 266 0 R (page.38) 267 0 R (page.39) 268 0 R (page.4) 196 0 R (page.40) 1176 0 R] /Limits [(page.36) (page.40)] >> endobj 1361 0 obj << /Names [(page.41) 1232 0 R (page.42) 1284 0 R (page.43) 1290 0 R (page.5) 317 0 R (page.6) 341 0 R (page.7) 197 0 R] /Limits [(page.41) (page.7)] >> endobj 1362 0 obj << /Names [(page.8) 198 0 R (page.9) 444 0 R (section*.10) 301 0 R (section*.100) 700 0 R (section*.101) 701 0 R (section*.102) 703 0 R] /Limits [(page.8) (section*.102)] >> endobj 1363 0 obj << /Names [(section*.103) 704 0 R (section*.104) 715 0 R (section*.105) 716 0 R (section*.106) 719 0 R (section*.107) 720 0 R (section*.108) 722 0 R] /Limits [(section*.103) (section*.108)] >> endobj 1364 0 obj << /Names [(section*.109) 723 0 R (section*.11) 302 0 R (section*.110) 724 0 R (section*.111) 725 0 R (section*.112) 738 0 R (section*.113) 739 0 R] /Limits [(section*.109) (section*.113)] >> endobj 1365 0 obj << /Names [(section*.114) 740 0 R (section*.115) 741 0 R (section*.116) 742 0 R (section*.117) 743 0 R (section*.118) 747 0 R (section*.119) 748 0 R] /Limits [(section*.114) (section*.119)] >> endobj 1366 0 obj << /Names [(section*.12) 303 0 R (section*.120) 759 0 R (section*.121) 760 0 R (section*.122) 761 0 R (section*.123) 762 0 R (section*.124) 767 0 R] /Limits [(section*.12) (section*.124)] >> endobj 1367 0 obj << /Names [(section*.125) 768 0 R (section*.126) 769 0 R (section*.127) 770 0 R (section*.128) 771 0 R (section*.129) 772 0 R (section*.13) 304 0 R] /Limits [(section*.125) (section*.13)] >> endobj 1368 0 obj << /Names [(section*.130) 784 0 R (section*.131) 785 0 R (section*.132) 786 0 R (section*.133) 787 0 R (section*.134) 788 0 R (section*.135) 789 0 R] /Limits [(section*.130) (section*.135)] >> endobj 1369 0 obj << /Names [(section*.136) 792 0 R (section*.137) 793 0 R (section*.138) 808 0 R (section*.139) 809 0 R (section*.14) 305 0 R (section*.140) 810 0 R] /Limits [(section*.136) (section*.140)] >> endobj 1370 0 obj << /Names [(section*.141) 811 0 R (section*.142) 815 0 R (section*.143) 816 0 R (section*.144) 817 0 R (section*.145) 818 0 R (section*.146) 819 0 R] /Limits [(section*.141) (section*.146)] >> endobj 1371 0 obj << /Names [(section*.147) 820 0 R (section*.148) 832 0 R (section*.149) 833 0 R (section*.15) 306 0 R (section*.150) 834 0 R (section*.151) 835 0 R] /Limits [(section*.147) (section*.151)] >> endobj 1372 0 obj << /Names [(section*.152) 836 0 R (section*.153) 837 0 R (section*.154) 842 0 R (section*.155) 843 0 R (section*.156) 859 0 R (section*.157) 860 0 R] /Limits [(section*.152) (section*.157)] >> endobj 1373 0 obj << /Names [(section*.158) 861 0 R (section*.159) 862 0 R (section*.16) 342 0 R (section*.160) 865 0 R (section*.161) 866 0 R (section*.162) 867 0 R] /Limits [(section*.158) (section*.162)] >> endobj 1374 0 obj << /Names [(section*.163) 868 0 R (section*.164) 869 0 R (section*.165) 889 0 R (section*.166) 890 0 R (section*.167) 891 0 R (section*.168) 892 0 R] /Limits [(section*.163) (section*.168)] >> endobj 1375 0 obj << /Names [(section*.169) 893 0 R (section*.17) 343 0 R (section*.170) 896 0 R (section*.171) 897 0 R (section*.172) 906 0 R (section*.173) 907 0 R] /Limits [(section*.169) (section*.173)] >> endobj 1376 0 obj << /Names [(section*.174) 908 0 R (section*.175) 911 0 R (section*.176) 912 0 R (section*.177) 913 0 R (section*.178) 914 0 R (section*.179) 915 0 R] /Limits [(section*.174) (section*.179)] >> endobj 1377 0 obj << /Names [(section*.18) 344 0 R (section*.180) 931 0 R (section*.181) 932 0 R (section*.182) 933 0 R (section*.183) 934 0 R (section*.184) 935 0 R] /Limits [(section*.18) (section*.184)] >> endobj 1378 0 obj << /Names [(section*.185) 938 0 R (section*.186) 939 0 R (section*.187) 950 0 R (section*.188) 951 0 R (section*.189) 952 0 R (section*.19) 345 0 R] /Limits [(section*.185) (section*.19)] >> endobj 1379 0 obj << /Names [(section*.190) 956 0 R (section*.191) 957 0 R (section*.192) 958 0 R (section*.193) 959 0 R (section*.194) 960 0 R (section*.195) 971 0 R] /Limits [(section*.190) (section*.195)] >> endobj 1380 0 obj << /Names [(section*.196) 972 0 R (section*.197) 973 0 R (section*.198) 974 0 R (section*.199) 975 0 R (section*.2) 192 0 R (section*.20) 346 0 R] /Limits [(section*.196) (section*.20)] >> endobj 1381 0 obj << /Names [(section*.200) 980 0 R (section*.201) 981 0 R (section*.202) 991 0 R (section*.203) 992 0 R (section*.204) 993 0 R (section*.205) 997 0 R] /Limits [(section*.200) (section*.205)] >> endobj 1382 0 obj << /Names [(section*.206) 998 0 R (section*.207) 999 0 R (section*.208) 1000 0 R (section*.209) 1001 0 R (section*.21) 367 0 R (section*.210) 1011 0 R] /Limits [(section*.206) (section*.210)] >> endobj 1383 0 obj << /Names [(section*.211) 1012 0 R (section*.212) 1014 0 R (section*.213) 1015 0 R (section*.214) 1016 0 R (section*.215) 1026 0 R (section*.216) 1027 0 R] /Limits [(section*.211) (section*.216)] >> endobj 1384 0 obj << /Names [(section*.217) 1028 0 R (section*.218) 1029 0 R (section*.219) 1030 0 R (section*.22) 371 0 R (section*.220) 1034 0 R (section*.221) 1035 0 R] /Limits [(section*.217) (section*.221)] >> endobj 1385 0 obj << /Names [(section*.222) 1045 0 R (section*.223) 1046 0 R (section*.224) 1047 0 R (section*.225) 1051 0 R (section*.226) 1052 0 R (section*.227) 1053 0 R] /Limits [(section*.222) (section*.227)] >> endobj 1386 0 obj << /Names [(section*.228) 1054 0 R (section*.229) 1055 0 R (section*.23) 372 0 R (section*.230) 1067 0 R (section*.231) 1068 0 R (section*.232) 1069 0 R] /Limits [(section*.228) (section*.232)] >> endobj 1387 0 obj << /Names [(section*.233) 1070 0 R (section*.234) 1071 0 R (section*.235) 1072 0 R (section*.24) 373 0 R (section*.25) 374 0 R (section*.26) 399 0 R] /Limits [(section*.233) (section*.26)] >> endobj 1388 0 obj << /Names [(section*.27) 402 0 R (section*.28) 403 0 R (section*.29) 404 0 R (section*.3) 240 0 R (section*.30) 405 0 R (section*.31) 445 0 R] /Limits [(section*.27) (section*.31)] >> endobj 1389 0 obj << /Names [(section*.32) 446 0 R (section*.33) 447 0 R (section*.34) 485 0 R (section*.35) 486 0 R (section*.36) 489 0 R (section*.37) 490 0 R] /Limits [(section*.32) (section*.37)] >> endobj 1390 0 obj << /Names [(section*.38) 491 0 R (section*.39) 492 0 R (section*.4) 279 0 R (section*.40) 504 0 R (section*.41) 505 0 R (section*.42) 506 0 R] /Limits [(section*.38) (section*.42)] >> endobj 1391 0 obj << /Names [(section*.43) 519 0 R (section*.44) 520 0 R (section*.45) 549 0 R (section*.46) 550 0 R (section*.47) 551 0 R (section*.48) 552 0 R] /Limits [(section*.43) (section*.48)] >> endobj 1392 0 obj << /Names [(section*.49) 560 0 R (section*.5) 281 0 R (section*.50) 564 0 R (section*.51) 565 0 R (section*.52) 566 0 R (section*.53) 567 0 R] /Limits [(section*.49) (section*.53)] >> endobj 1393 0 obj << /Names [(section*.54) 568 0 R (section*.55) 578 0 R (section*.56) 579 0 R (section*.57) 580 0 R (section*.58) 581 0 R (section*.59) 582 0 R] /Limits [(section*.54) (section*.59)] >> endobj 1394 0 obj << /Names [(section*.6) 282 0 R (section*.60) 586 0 R (section*.61) 596 0 R (section*.62) 597 0 R (section*.63) 598 0 R (section*.64) 599 0 R] /Limits [(section*.6) (section*.64)] >> endobj 1395 0 obj << /Names [(section*.65) 603 0 R (section*.66) 604 0 R (section*.67) 611 0 R (section*.68) 612 0 R (section*.69) 613 0 R (section*.7) 283 0 R] /Limits [(section*.65) (section*.7)] >> endobj 1396 0 obj << /Names [(section*.70) 617 0 R (section*.71) 618 0 R (section*.72) 620 0 R (section*.73) 621 0 R (section*.74) 622 0 R (section*.75) 635 0 R] /Limits [(section*.70) (section*.75)] >> endobj 1397 0 obj << /Names [(section*.76) 636 0 R (section*.77) 637 0 R (section*.78) 638 0 R (section*.79) 639 0 R (section*.8) 288 0 R (section*.80) 643 0 R] /Limits [(section*.76) (section*.80)] >> endobj 1398 0 obj << /Names [(section*.81) 644 0 R (section*.82) 651 0 R (section*.83) 652 0 R (section*.84) 653 0 R (section*.85) 657 0 R (section*.86) 658 0 R] /Limits [(section*.81) (section*.86)] >> endobj 1399 0 obj << /Names [(section*.87) 659 0 R (section*.88) 660 0 R (section*.89) 661 0 R (section*.9) 289 0 R (section*.90) 674 0 R (section*.91) 675 0 R] /Limits [(section*.87) (section*.91)] >> endobj 1400 0 obj << /Names [(section*.92) 676 0 R (section*.93) 677 0 R (section*.94) 678 0 R (section*.95) 682 0 R (section*.96) 693 0 R (section*.97) 694 0 R] /Limits [(section*.92) (section*.97)] >> endobj 1401 0 obj << /Names [(section*.98) 695 0 R (section*.99) 696 0 R (table.0.1) 280 0 R (table.0.2) 487 0 R (table.0.3) 488 0 R (table.0.4) 507 0 R] /Limits [(section*.98) (table.0.4)] >> endobj 1402 0 obj << /Names [(table.0.5) 619 0 R (table.0.6) 702 0 R (table.0.7) 721 0 R (table.0.8) 794 0 R (table.0.9) 1013 0 R] /Limits [(table.0.5) (table.0.9)] >> endobj 1403 0 obj << /Kids [1319 0 R 1320 0 R 1321 0 R 1322 0 R 1323 0 R 1324 0 R] /Limits [(Doc-Start) (Rfn.QCannotation.Rdash.methods)] >> endobj 1404 0 obj << /Kids [1325 0 R 1326 0 R 1327 0 R 1328 0 R 1329 0 R 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