# # # R代码从装饰图案来源的小插曲prot2D /本月/ doc / prot2D。Rnw“# # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # #代码块1号:prot2D。Rnw: 65 - 66 # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # #库(prot2D) # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # #代码块2号:prot2D。Rnw: 69 - 71 # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # #(梳状突起)数据(pecten.fac) # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # #代码块3号:prot2D。Rnw: 88 - 89 # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # RIplot(梳状突起,n1 = 6, n2 = 6) # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # #代码块数量4:prot2D。Rnw: 95 - 96 # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # #梳状突起。规范< -常态。qt(梳状突起,n1 = 6, n2 = 6,情节= TRUE) # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # #代码块5号:prot2D。Rnw: 104 - 105 # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # #代码块6号:prot2D。Rnw: 110 - 111 # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # #。p < ES.prot(梳状突起。规范,n1 = 6, n2 = 6, f = pecten.fac) # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # #代码块7号:prot2D。Rnw: 135 - 137 # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # #。diff < modT.Prot (ES。p = TRUE, fdr.thr = 0.1,方法。罗斯福=“黑洞”)# # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # #代码块8号:prot2D。Rnw: 140 - 141 # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # featureNames (ES.diff) # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # #代码块9号:prot2D。Rnw: 144 - 145 # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # #头(fData (ES.diff)) # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # #代码块10号:prot2D。Rnw: 148 - 149 # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # #头(exprs (ES.diff)) # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # #代码块11号:prot2D。Rnw: 164 - 166 # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # Sim卡。< - Sim.Prot数据。2D(data=pecten, nsp=700, nr=10, p0=0.1, s2_0=0.2, d0=3) ################################################### ### code chunk number 12: prot2D.Rnw:169-171 ################################################### res.stud <- ttest.Prot(Sim.data, fdr.thr=0.1, plot=FALSE) res.mo <- modT.Prot(Sim.data, fdr.thr=0.1, plot=FALSE) ################################################### ### code chunk number 13: prot2D.Rnw:174-175 ################################################### featureNames(res.stud) ################################################### ### code chunk number 14: prot2D.Rnw:178-179 ################################################### featureNames(res.mo) ################################################### ### code chunk number 15: prot2D.Rnw:182-183 ################################################### notes(Sim.data)$SpotSig ################################################### ### code chunk number 16: prot2D.Rnw:188-189 ################################################### sessionInfo()