# #试试http://如果https:// url不支持源(“//www.anjoumacpherson.com/biocLite.R”) biocLite (“exomePeak”)

这个包是2.13版本Bioconductor;的稳定,最新的发布版本,请参阅exomePeak。

exomePeak

Bioconductor版本:2.13

包开发分析affinity-based epitranscriptome shortgun测序数据从MeRIP-seq (maA-seq)。它的基础是建立在exomePeak MATLAB软件包(孟、贾、et al。“Exome-based分析RNA表观基因组测序数据。”Bioinformatics 29.12 (2013): 1565-1567.) with new functions for differential analysis of two experimental conditions to unveil the dynamics in post-transcriptional regulation of the RNA methylome. The exomePeak R-package accepts and statistically supports multiple biological replicates, internally removes PCR artifacts and multi-mapping reads, outputs exome-based binding sites (RNA methylation sites) and detects differential post-transcriptional RNA modification sites between two experimental conditions in term of percentage rather the absolute amount. The package is still under active development, and we welcome all biology and computation scientist for all kinds of collaborations and communications. Please feel free to contact Dr. Jia Meng 如果你有任何问题。

作者:贾贾孟<。孟hotmail.com >

维修工:贾孟<贾。孟hotmail.com >

安装

安装这个包,开始R和输入:

# #试试http://如果https:// url不支持源(“//www.anjoumacpherson.com/biocLite.R”) biocLite (“exomePeak”)

文档

查看文档的版本这个包安装在您的系统,开始R和输入:

browseVignettes (“exomePeak”)

PDF	R脚本	介绍exomePeak
PDF		参考手册

细节

biocViews	HighThroughputSequencing,Methylseq,RNAseq,测序,软件
版本	1.0.0
Bioconductor自	BioC 2.13 (r - 3.0)(2.5年)
许可证	GPL-2
取决于	Rsamtools,GenomicFeatures(> = 1.0.0),rtracklayer
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包档案

遵循bob 体育网址 指示在R会话中使用这个包。

包的来源	exomePeak_1.0.0.tar.gz
Windows二进制	exomePeak_1.0.0.zip
Mac OS X 10.6 (Snow Leopard)	exomePeak_1.0.0.tgz
Subversion源	(用户名/密码:只读的)
Git源代码	https://github.com/bioconductor - mirror/exomepeak/tree/release - 2.13
包短Url	//www.anjoumacpherson.com/packages/exomePeak/
包下载报告	下载数据