安装这个包,开始R和输入:

# #试试http://如果https:// url不支持源(“//www.anjoumacpherson.com/biocLite.R”) biocLite (“AnnotationDbi”)

在大多数情况下,您不需要下载包存档。

AnnotationDbi

这个包是2.13版本Bioconductor;的稳定,最新的发布版本,请参阅AnnotationDbi

注释数据库接口

Bioconductor版本:2.13

提供用户界面和数据库连接代码注释数据软件包使用SQLite数据存储。

作者:Herve页,马克•卡尔森Seth猎鹰,Nianhua李

维修工:Bioconductor包维护者<维护者bioconductor.org >

从内部引用(R,回车引用(“AnnotationDbi”)):

安装

安装这个包,开始R和输入:

# #试试http://如果https:// url不支持源(“//www.anjoumacpherson.com/biocLite.R”) biocLite (“AnnotationDbi”)

文档

查看文档的版本这个包安装在您的系统,开始R和输入:

browseVignettes (“AnnotationDbi”)

PDF R脚本 AnnotationDbi:介绍Bioconductor注释包
PDF databaseTypes.pdf
PDF R脚本 如何使用bimaps”。db”注释包
PDF 参考手册
文本 新闻

细节

biocViews 注释,基础设施,软件
版本 1.24.0
Bioconductor自 BioC 2.1 (r - 2.6)(8.5年)
许可证 艺术- 2.0
取决于 R(> = 2.7.0)、方法、效用,BiocGenerics(> = 0.5.4),Biobase(> = 1.17.0)
进口 方法,跑龙套,DBI,RSQLite,BiocGenerics,Biobase,IRanges
链接
建议 DBI(> = 0.2 - 4),RSQLite(> = 0.6 - 4),hgu95av2.db,GO.db,org.Sc.sgd.db,org.At.tair.db,KEGG.db,RUnit,TxDb.Hsapiens.UCSC.hg19.knownGene,hom.Hs.inp.db,org.Hs.eg.db,seqnames.db,reactome.db,AnnotationForge,,org.TguttataTestingSubset.eg.db
SystemRequirements
增强了
URL
取决于我 a4Base,a4Preproc,adme16cod.db,affylmGUI,ag.db,agprobe,注释,AnnotationForge,AnnotationFuncs,anopheles.db0,arabidopsis.db0,ath1121501.db,ath1121501probe,吸引,barley1probe,bovine.db,bovine.db0,bovineprobe,bsubtilisprobe,canine.db,canine.db0,canine2.db,canine2probe,canineprobe,类别,celegans.db,celegansprobe,chicken.db,chicken.db0,chickenprobe,嵌合体,chimp.db0,ChromHeatMap,citrusprobe,cottonprobe,customProDB,DO.db,drosgenome1.db,drosgenome1probe,drosophila2.db,drosophila2probe,ecoli2.db,ecoli2probe,ecoliasv2probe,ecoliK12.db0,ecoliprobe,ecoliSakai.db0,eisa,ExpressionView,FDb.InfiniumMethylation.hg18,FDb.InfiniumMethylation.hg19,fly.db0,gahgu133a.db,gahgu133aprobe,gahgu133b.db,gahgu133bprobe,gahgu133plus2.db,gahgu133plus2probe,gahgu95av2.db,gahgu95av2probe,gahgu95b.db,gahgu95bprobe,gahgu95c.db,gahgu95cprobe,gahgu95d.db,gahgu95dprobe,gahgu95e.db,gahgu95eprobe,GenomicFeatures,GGdata,GGHumanMethCancerPanelv1.db,GO.db,GOFunction,goProfiles,h10kcod.db,h20kcod.db,hcg110.db,hcg110probe,hgfocus.db,hgfocusprobe,hgu133a.db,hgu133a2.db,hgu133a2probe,hgu133aprobe,hgu133atagprobe,hgu133b.db,hgu133bprobe,hgu133plus2.db,hgu133plus2probe,hgu219.db,hgu219probe,hgu95a.db,hgu95aprobe,hgu95av2.db,hgu95av2probe,hgu95b.db,hgu95bprobe,hgu95c.db,hgu95cprobe,hgu95d.db,hgu95dprobe,hgu95e.db,hgu95eprobe,hguatlas13k.db,hgubeta7.db,hguDKFZ31.db,hgug4100a.db,hgug4101a.db,hgug4110b.db,hgug4111a.db,hgug4112a.db,hgug4845a.db,hguqiagenv3.db,hi16cod.db,hom.At.inp.db,hom.Ce.inp.db,hom.Dm.inp.db,hom.Dr.inp.db,hom.Hs.inp.db,hom.Mm.inp.db,hom.Rn.inp.db,hom.Sc.inp.db,Homo.sapiens,hs25kresogen.db,Hs6UG171.db,HsAgilentDesign026652.db,hthgu133a.db,hthgu133aprobe,hthgu133b.db,hthgu133bprobe,hthgu133pluspmprobe,htmg430aprobe,htmg430bprobe,htmg430pmprobe,htrat230pmprobe,htratfocusprobe,hu35ksuba.db,hu35ksubaprobe,hu35ksubb.db,hu35ksubbprobe,hu35ksubc.db,hu35ksubcprobe,hu35ksubd.db,hu35ksubdprobe,hu6800.db,hu6800probe,HuExExonProbesetLocation,HuExExonProbesetLocationHg18,HuExExonProbesetLocationHg19,hugene10stprobeset.db,hugene10sttranscriptcluster.db,hugene10stv1probe,hugene11stprobeset.db,hugene11sttranscriptcluster.db,hugene20stprobeset.db,hugene20sttranscriptcluster.db,hugene21stprobeset.db,hugene21sttranscriptcluster.db,human.db0,HuO22.db,hwgcod.db,IlluminaHumanMethylation27k.db,IlluminaHumanMethylation450k.db,IlluminaHumanMethylation450kprobe,illuminaHumanv1.db,illuminaHumanv2.db,illuminaHumanv2BeadID.db,illuminaHumanv3.db,illuminaHumanv4.db,illuminaHumanWGDASLv3.db,illuminaHumanWGDASLv4.db,illuminaMousev1.db,illuminaMousev1p1.db,illuminaMousev2.db,illuminaRatv1.db,indac.db,JazaeriMetaData.db,KEGG.db,LAPOINTE.db,lumiHumanAll.db,lumiHumanIDMapping,lumiMouseAll.db,lumiMouseIDMapping,lumiRatAll.db,lumiRatIDMapping,m10kcod.db,m20kcod.db,maizeprobe,malaria.db0,maPredictDSC,medicagoprobe,mgu74a.db,mgu74aprobe,mgu74av2.db,mgu74av2probe,mgu74b.db,mgu74bprobe,mgu74bv2.db,mgu74bv2probe,mgu74c.db,mgu74cprobe,mgu74cv2.db,mgu74cv2probe,mguatlas5k.db,mgug4104a.db,mgug4120a.db,mgug4121a.db,mgug4122a.db,mi16cod.db,mirbase.db,mirna10probe,中长期规划,mm24kresogen.db,MmAgilentDesign026655.db,moe430a.db,moe430aprobe,moe430b.db,moe430bprobe,MoExExonProbesetLocation,mogene10stprobeset.db,mogene10sttranscriptcluster.db,mogene10stv1probe,mogene11stprobeset.db,mogene11sttranscriptcluster.db,mogene20stprobeset.db,mogene20sttranscriptcluster.db,mogene21stprobeset.db,mogene21sttranscriptcluster.db,mouse.db0,mouse4302.db,mouse4302probe,mouse430a2.db,mouse430a2probe,mpedbarray.db,mu11ksuba.db,mu11ksubaprobe,mu11ksubb.db,mu11ksubbprobe,Mu15v1.db,mu19ksuba.db,mu19ksubb.db,mu19ksubc.db,Mu22v3.db,Mus.musculus,mwgcod.db,Norway981.db,nugohs1a520180.db,nugohs1a520180probe,nugomm1a520177.db,nugomm1a520177probe,OperonHumanV3.db,org.Ag.eg.db,org.At.tair.db,org.Bt.eg.db,org.Ce.eg.db,org.Cf.eg.db,org.Dm.eg.db,org.Dr.eg.db,org.EcK12.eg.db,org.EcSakai.eg.db,org.Gg.eg.db,org.Hs.eg.db,org.Hs.ipi.db,org.Mm.eg.db,org.Mmu.eg.db,org.Pf.plasmo.db,org.Pt.eg.db,org.Rn.eg.db,org.Sc.sgd.db,org.Sco.eg.db,org.Ss.eg.db,org.Tgondii.eg.db,org.Xl.eg.db,OrganismDbi,PADOG,paeg1aprobe,PAnnBuilder,PANTHER.db,PartheenMetaData.db,pathRender,pedbarrayv10.db,pedbarrayv9.db,PFAM.db,PGSEA,pig.db0,plasmodiumanophelesprobe,POCRCannotation.db,poplarprobe,porcine.db,porcineprobe,primeviewprobe,r10kcod.db,rae230a.db,rae230aprobe,rae230b.db,rae230bprobe,RaExExonProbesetLocation,ragene10stprobeset.db,ragene10sttranscriptcluster.db,ragene10stv1probe,ragene11stprobeset.db,ragene11sttranscriptcluster.db,ragene20stprobeset.db,ragene20sttranscriptcluster.db,ragene21stprobeset.db,ragene21sttranscriptcluster.db,rat.db0,rat2302.db,rat2302probe,rattoxfxprobe,Rattus.norvegicus,reactome.db,Resourcerer,rgu34a.db,rgu34aprobe,rgu34b.db,rgu34bprobe,rgu34c.db,rgu34cprobe,rguatlas4k.db,rgug4105a.db,rgug4130a.db,rgug4131a.db,rhesus.db0,rhesusprobe,ri16cod.db,riceprobe,RnAgilentDesign028282.db,rnu34.db,rnu34probe,Roberts2005Annotation.db,RpsiXML,rtu34.db,rtu34probe,rwgcod.db,安全,saureusprobe,seqnames.db,SHDZ.db,soybeanprobe,sugarcaneprobe,targetscan.Hs.eg.db,targetscan.Mm.eg.db,test3probe,tinesath1probe,tomatoprobe,topGO,u133x3p.db,u133x3pprobe,vitisviniferaprobe,wheatprobe,worm.db0,xenopus.db0,xenopuslaevisprobe,xlaevis.db,xlaevis2probe,xtropicalisprobe,yeast.db0,yeast2.db,yeast2probe,ygs98.db,ygs98probe,zebrafish.db,zebrafish.db0,zebrafishprobe
进口我 adme16cod.db,adSplit,affycoretools,ag.db,AllelicImbalance,annaffy,注释,AnnotationHub,anopheles.db0,arabidopsis.db0,ath1121501.db,吸引,beadarray,生命网络,bovine.db,bovine.db0,CancerMutationAnalysis,canine.db,canine.db0,canine2.db,类别,categoryCompare,celegans.db,cheung2010,chicken.db,chicken.db0,chimp.db0,ChIPpeakAnno,ChromHeatMap,clusterProfiler,CoCiteStats,customProDB,DeSousa2013,DO.db,domainsignatures,剂量,drosgenome1.db,drosophila2.db,ecoli2.db,ecoliK12.db0,ecoliSakai.db0,ExpressionView,FDb.FANTOM4.promoters.hg19,FDb.InfiniumMethylation.hg18,FDb.InfiniumMethylation.hg19,FDb.UCSC.snp135common.hg19,FDb.UCSC.snp137common.hg19,FDb.UCSC.tRNAs,fly.db0,FunciSNP,gahgu133a.db,gahgu133b.db,gahgu133plus2.db,gahgu95av2.db,gahgu95b.db,gahgu95c.db,gahgu95d.db,gahgu95e.db,gCMAP,gCMAPWeb,genefilter,geneplotter,GGBase,GGHumanMethCancerPanelv1.db,GGtools,GlobalAncova,globaltest,GO.db,GOFunction,GOSemSim,goseq,GOSim,GOstats,goTools,石墨,GSEABase,Gviz,h10kcod.db,h20kcod.db,hcg110.db,hgfocus.db,hgu133a.db,hgu133a2.db,hgu133b.db,hgu133plus2.db,hgu219.db,hgu95a.db,hgu95av2.db,hgu95b.db,hgu95c.db,hgu95d.db,hgu95e.db,hguatlas13k.db,hgubeta7.db,hguDKFZ31.db,hgug4100a.db,hgug4101a.db,hgug4110b.db,hgug4111a.db,hgug4112a.db,hgug4845a.db,hguqiagenv3.db,hi16cod.db,hom.At.inp.db,hom.Ce.inp.db,hom.Dm.inp.db,hom.Dr.inp.db,hom.Hs.inp.db,hom.Mm.inp.db,hom.Rn.inp.db,hom.Sc.inp.db,Homo.sapiens,hs25kresogen.db,Hs6UG171.db,HsAgilentDesign026652.db,hthgu133a.db,hthgu133b.db,HTSanalyzeR,hu35ksuba.db,hu35ksubb.db,hu35ksubc.db,hu35ksubd.db,hu6800.db,hugene10stprobeset.db,hugene10sttranscriptcluster.db,hugene11stprobeset.db,hugene11sttranscriptcluster.db,hugene20stprobeset.db,hugene20sttranscriptcluster.db,hugene21stprobeset.db,hugene21sttranscriptcluster.db,human.db0,HuO22.db,hwgcod.db,IlluminaHumanMethylation27k.db,IlluminaHumanMethylation450k.db,illuminaHumanv1.db,illuminaHumanv2.db,illuminaHumanv2BeadID.db,illuminaHumanv3.db,illuminaHumanv4.db,illuminaHumanWGDASLv3.db,illuminaHumanWGDASLv4.db,illuminaMousev1.db,illuminaMousev1p1.db,illuminaMousev2.db,illuminaRatv1.db,indac.db,JazaeriMetaData.db,KEGG.db,keggorthology,KEGGprofile,LAPOINTE.db,光民,lumiHumanAll.db,lumiHumanIDMapping,lumiMouseAll.db,lumiMouseIDMapping,lumiRatAll.db,lumiRatIDMapping,m10kcod.db,m20kcod.db,malaria.db0,methyAnalysis,methylumi,mgu74a.db,mgu74av2.db,mgu74b.db,mgu74bv2.db,mgu74c.db,mgu74cv2.db,mguatlas5k.db,mgug4104a.db,mgug4120a.db,mgug4121a.db,mgug4122a.db,mi16cod.db,MineICA,海市蜃楼,mirbase.db,mm24kresogen.db,MmAgilentDesign026655.db,moe430a.db,moe430b.db,mogene10stprobeset.db,mogene10sttranscriptcluster.db,mogene11stprobeset.db,mogene11sttranscriptcluster.db,mogene20stprobeset.db,mogene20sttranscriptcluster.db,mogene21stprobeset.db,mogene21sttranscriptcluster.db,mouse.db0,mouse4302.db,mouse430a2.db,mpedbarray.db,mu11ksuba.db,mu11ksubb.db,Mu15v1.db,mu19ksuba.db,mu19ksubb.db,mu19ksubc.db,Mu22v3.db,Mus.musculus,mwgcod.db,Norway981.db,nugohs1a520180.db,nugomm1a520177.db,OperonHumanV3.db,org.Ag.eg.db,org.At.tair.db,org.Bt.eg.db,org.Ce.eg.db,org.Cf.eg.db,org.Dm.eg.db,org.Dr.eg.db,org.EcK12.eg.db,org.EcSakai.eg.db,org.Gg.eg.db,org.Hs.eg.db,org.Hs.ipi.db,org.Mm.eg.db,org.Mmu.eg.db,org.Pf.plasmo.db,org.Pt.eg.db,org.Rn.eg.db,org.Sc.sgd.db,org.Sco.eg.db,org.Ss.eg.db,org.Tgondii.eg.db,org.Xl.eg.db,OrganismDbi,PADOG,PAnnBuilder,PANTHER.db,PartheenMetaData.db,pathview,pcaGoPromoter,PCpheno,pedbarrayv10.db,pedbarrayv9.db,PFAM.db,phenoTest,pig.db0,POCRCannotation.db,PolyPhen.Hsapiens.dbSNP131,porcine.db,ppiData,qpgraph,r10kcod.db,rae230a.db,rae230b.db,ragene10stprobeset.db,ragene10sttranscriptcluster.db,ragene11stprobeset.db,ragene11sttranscriptcluster.db,ragene20stprobeset.db,ragene20sttranscriptcluster.db,ragene21stprobeset.db,ragene21sttranscriptcluster.db,rat.db0,rat2302.db,Rattus.norvegicus,reactome.db,ReactomePA,REDseq,ReportingTools,rgu34a.db,rgu34b.db,rgu34c.db,rguatlas4k.db,rgug4105a.db,rgug4130a.db,rgug4131a.db,rhesus.db0,ri16cod.db,RmiR.Hs.miRNA,RmiR.hsa,RnAgilentDesign028282.db,rnu34.db,Roberts2005Annotation.db,rTRM,rtu34.db,rwgcod.db,ScISI,seqnames.db,SHDZ.db,SIFT.Hsapiens.dbSNP132,SLGI,targetscan.Hs.eg.db,targetscan.Mm.eg.db,tigre,topGO,TxDb.Athaliana.BioMart.plantsmart10,TxDb.Athaliana.BioMart.plantsmart12,TxDb.Athaliana.BioMart.plantsmart14,TxDb.Athaliana.BioMart.plantsmart16,TxDb.Athaliana.BioMart.plantsmart19,TxDb.Celegans.UCSC.ce6.ensGene,TxDb.Dmelanogaster.UCSC.dm3.ensGene,TxDb.Hsapiens.UCSC.hg18.knownGene,TxDb.Hsapiens.UCSC.hg19.knownGene,TxDb.Hsapiens.UCSC.hg19.lincRNAsTranscripts,TxDb.Mmusculus.UCSC.mm10.ensGene,TxDb.Mmusculus.UCSC.mm10.knownGene,TxDb.Mmusculus.UCSC.mm9.knownGene,TxDb.Rnorvegicus.UCSC.rn4.ensGene,TxDb.Rnorvegicus.UCSC.rn5.refGene,TxDb.Scerevisiae.UCSC.sacCer2.sgdGene,TxDb.Scerevisiae.UCSC.sacCer3.sgdGene,u133x3p.db,UniProt.ws,VariantAnnotation,virtualArray,worm.db0,xenopus.db0,xlaevis.db,yeast.db0,yeast2.db,ygs98.db,zebrafish.db,zebrafish.db0
建议我 BiocCaseStudies,BiocGenerics,GeneAnswers,GeneRegionScan,GenomicRanges,limma,MmPalateMiRNA,neaGUI,oneChannelGUI,qcmetrics,sigPathway
构建报告

包档案

遵循bob 体育网址 指示在R会话中使用这个包。

包的来源 AnnotationDbi_1.24.0.tar.gz
Windows二进制 AnnotationDbi_1.24.0.zip
Mac OS X 10.6 (Snow Leopard) AnnotationDbi_1.24.0.tgz
Subversion源 (用户名/密码:只读的)
Git源代码 https://github.com/bioconductor - mirror/annotationdbi/tree/release - 2.13
包短Url //www.anjoumacpherson.com/packages/AnnotationDbi/
包下载报告 下载数据

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