# # # R代码从装饰图案来源的小插曲VegaMC /本月/ doc / VegaMC。Rnw“# # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # #代码块1号:library_VegaMC # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # #库(VegaMC) # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # #代码块2号:copy_dataset # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # file.copy(执行(“/ breast_Affy500K示例。txt”,包= " VegaMC "),“。”) # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # #代码块3号:runVegaMC_breast # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # < - VegaMC (“breast_Affy500K结果。txt”, output_file_name = "乳房。分析”,β= 1,min_region_bp_size = 2000, b = 5000, html = FALSE, getGenes = FALSE) # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # #代码块数量4:colnames_results # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # colnames(结果)# # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # #代码块5号:Create_BAFSet # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # (genoset) baf的数据。ds = GenoSet (locData = locData。gr,远程雷达=假的。远程雷达,baf =假的。baf pData =假的。宇宙pData注释=“SNP6”=“hg19”) # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # #代码块6号:runVegaMC_BAFSet # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # genoset。< - vegaMC (baf的结果。ds, output_file_name = " genoset.analysis.default ", html = FALSE, getGenes = FALSE, baf = TRUE) # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # #代码块7号:Create_CNSet # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # cn。ds = GenoSet (locData = locData。gr,远程雷达=假的。远程雷达,pData =假的。宇宙pData注释=“SNP6”=“hg19”) # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # #代码块8号:runVegaMC_CNSet # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # genoset。结果< - vegaMC (cn。ds, output_file_name = " genoset.analysis.default ", html = FALSE, getGenes = FALSE, baf = FALSE)