# # # R代码从装饰图案来源的小插曲SAGx /本月/ doc / samroc-ex。Rnw“# # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # #代码块1号:samroc-ex。Rnw: 63 - 69 # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # #库(“SAGx”)库(“相乘”)的数据(golub) set.seed samroc (849867)。res < - samrocN (data = golub公式= ~ as.factor (golub.cl))显示(samroc.res) # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # #代码块2号:dummyex3 (eval = FALSE) # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # #情节(samroc.res) # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # #代码块3号:samroc-ex。Rnw: 83 - 85 # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # par (bg =“玉米雌穗花丝”)情节(samroc.res) # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # #代码块数量4:samroc-ex。Rnw: 99 - 102 # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # par (bg =“玉米雌穗花丝”)(samroc嘘。res@pvalues xlab =“假定值”,主要= "坳=“橙色”,频率= F)打印(abline (samroc。res@p0 0坳= '红色'))# # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # #代码块5号:samroc-ex。Rnw: 110 - 116 # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # par (bg =“玉米雌穗花丝”)罗斯福pava。< - - - - - -罗斯福(ps = samroc.res@pvalues)情节(samroc。res@pvalues,罗斯福pava.local美元。罗斯福,type = ' n ', xlab =“假定值”,ylab =“错误发现率(罗斯福)”(洛斯(samroc)行。res@pvalues,罗斯福pava.local.fdr美元),坳= '红色')行(洛斯(samroc。res@pvalues,罗斯福pava.fdr美元),传奇坳=“蓝”)(0.1,0.9,pch = NULL,坳= c(“红”、“蓝色”),c (pava当地“罗斯福”、“pava罗斯福”),lty = 1) # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # #代码块6号:samroc-ex。Rnw: 127 - 133 # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # #库(hu6800.db) kegg < - as.list hu6800PATH2PROBE probeset < -戈卢布。gnames [3] GSEA.mean。t (samroc = samroc。res probeset = probeset pway = kegg[1],类型=“原始”,两个。端= FALSE)