版本1.2.1的更改:o bug annmap-112 TranscriptCoordstogenome和proteincoordstogenome组在返回Granges对象时都失败了,因为我将其作为数字而不是整数。1.1.1版本的更改:o经过时,改进的基因组图。GENESDATA.FRAME用于调用其上的GenEdetails,以确保数据以正确的格式。已将其删除,以便您可以通过自定义区域并将其绘制在图表上。版本0.99.3的更改:o bug annmap-11 xxxinrange(null)用于丢弃错误。现在它返回null。o BUG ANNMAP-111修复了翻译数据不正确时的崩溃,并在找到UTR/编码范围时会导致我们从翻译外显子掉落。版本0.99.2的更改:o bug annmap-109 Genetosymbol通过基因ID的向量时,按基因启动位置的顺序返回了符号,而不是调用该函数的顺序。版本0.99.1的更改:o bug annmap-101 ngsbridgeplot呼叫,没有基因在范围内具有巨大的边框。o BUG ANNMAP-106空NGSBridgePlot Trace应在0上绘制线。o Bug AnnMap-107 TranscriptTocodingRange非常慢。版本0.99.0的更改:o新的初始版本o bug annmap-98呼叫Transcripttottottottottottottotlanslatedprobes for HPRT1中的转录本导致版本0.9.16的崩溃变化:o Bug AnnMap-97 GenetoexonProbeset在As.Vector = As.Vector = As.Vector = As.vector = As.vector =版本0.9.15:o新的AnnMap-94添加了用于设置数据库的AnnMapadDconnection方法。 Changes in version 0.9.14: o NEW ANNMAP-90 Added generateBridgeData method for helping with BAM file imports. o IMPROVED ANNMAP-93 Refactored out some NCBI->Ensembl seqname mapping functions. o IMPROVED ANNMAP-84 Added ngsBridgePlot examples to the cookbook. Changes in version 0.9.13: o IMPROVED ANNMAP-78 Cookbook now appears when vignette( package='annmap' ) is called. Changes in version 0.9.12: o IMPROVED ANNMAP-74, ANNMAP-75, ANNMAP-76; Fixed warnings and notes when using R-2.15 Changes in version 0.9.11: o IMPROVED ANNMAP-73 Methods generalisedNameToNCBI, generalisedNameToEnsembl, seqnameMapping, seqnamesToNCBI and seqnamesToEnsembl added to allow easy renaming of the seqnames column of GRanges data. Changes in version 0.9.10: o IMPROVED ANNMAP-71 Bug in geneToSymbol fixed Changes in version 0.9.9: o IMPROVED ANNMAP-63 We now use GenomicRanges instead of IRanges Changes in version 0.9.8: o IMPROVED ANNMAP-58 Added 4 pos translation documentation to cookbook o BUG ANNMAP-60 Webservice tests were failing o BUG ANNMAP-54 geneToExonProbeset didn't support as.vector Changes in version 0.9.7: o BUG ANNMAP-48 Error in proteinCoordsToGenome in annmap o BUG ANNMAP-47 annmapGenePlot fails to show individual transcripts o IMPROVED ANNMAP-45 Added a NEWS.Rd file to inst Changes in version 0.9.6: o BUG Fixed ANNMAP-44; genomicPlot crashes when called with very small overlapped areas Changes in version 0.9.5: o IMPROVED ANNMAP-41; All InRange methods are now S3 methods which work with character, data.frame or RangedData (see ?annmap.range). o IMPROVED ANNMAP-42; genomicPlot highlights 'colour' column is now 'col' as with all other methods. o BUG ANNMAP-40; genomicPlot crashes if highlights data.frame has unexpected columns.