1.4.1 o plot1gene现在将“组”变量强制为plot1gene中的一个因素1.4.0 o bioc 2.10 1.2.4 o投掷错误，以防万一“ group”变量包含SpendalMap 1.2.3中的缺失值，o在of spectalmap 1.2.3 o上构建问题上的问题Windows 1.2.2 o的某些版本更适当地处理plot1gene 1.2.1中的点参数1.2.1 o fix for SpectralMap 1.2.0 o Bioc释放2.9 1.1.4 o修复的limmatwolevels 1.1.3 o更新用于修订的glmnet软件包。1.1.1 o在生物导体上0.0-26 o mpm的更好的参数处理0.0-25 o修复了limma对象的HistPvalue o添加Marraylm对象的HistPValue方法0.0-24 o在HistPvalue方法中添加对主要参数的适当支持。0.0-23 o添加对cex，cex.lab，cex.main to plot1gene 0.0-22 o添加支持允许在HistPvalue中指定XLAB和YLAB 0.0-21 o移动注释测试到A4Reporporting Tests to A4Reporporting Poffage o histpvalue Plotter o添加Heatmap的完整文档o。o删除了NLCV依赖性以加快加载A4 o删除RcolorBrewer依赖性（加速加载）o更改了特征的列名称与生物导体命名符号o分裂A4Core，A4Preproc和a4preproc和a4classif软件包，并成为A4BASE FACKAGES，并成为A4Base 0.0-19 O MOVE 0.0-19 O $ SRC_PKG/ SRC_PKG/ $ SRC_PKG/等于$ src_pkg/inst/ett as tooltip.script（plotlogratio），需要以$ installed_pkg/etc 0.0-18 o添加varequal参数添加到ttest（默认为false）o改进的y轴注释0.0-17 o删除y轴注释。混乱RIX通用是在NLCV中定义的；否则，NLCV中的一个被掩盖了0.0-16 o频谱频谱颜色的spectralmap（现在使用a4palette）o重新定义Marraylm对象的顶台上的方法（在NLCV中覆盖）默认指数在火山网及其数字，数字，缺失的0.0-15 o fix plot1gene（尊重表情表中的因子水平的尊重序列）0.0-14 O中的bug（LODS值应以越来越多的顺序，越来越多的顺序排序），与p值相反）o将probe2gene参数添加到plot1gene o添加ttest对象的上顶方法o设置spectralmap的默认值sub = sub =“ to package o expose a4palette function to user and document o add histPvalue for limmaResult object o turned propDEgenes into generic o expose volcanoplotter to user and document o add probe2gene argument to tTest, pamClass, rfClass (defaults to TRUE) o significant improvements to documentation 0.0-13 o fix seemingly inverted logic of topPValues and topLogRatios in volcanoPlot o reduce space between left 'wing' of volcanoPlot and y axis o extended volcanoPlot documentation o integrate annotationTable package into a4 o improve topTable for rfClass and fix xtable method accordingly o adapt rfClass to improved varSelRF 0.7-1 which now has a verbose=FALSE option that also silences gc() output (patches Tobias Verbeke) o add documentation for topTable methods o fix typo print.topTablePam 0.0-12 o volcanoPlot made generic, methods for 'limma', 'tTest' and numeric vectors 'x' and 'y' 0.0-11 o add varSelRF wrapper rfClass o add new addGeneInfo function to produce ExpressionSet objects similar to the pipeline o topTable method (and corresponding print and xtable methods) for lasso models o topTable method (and corresponding print and xtable methods) for rfClass models o topTable method (and corresponding print and xtable methods) for pamClass models 0.0-10 o add lassoClass o extract probe2gene function out of spectralMap.R into probe2gene.R o improve display of sample names in spectralMap 0.0-9 o fix pamr error handling mess o documentation fix in spectralMap o added mpm.args argument to set arguments for mpm (rationale: allow for PCA) 0.0-8 o fixed volcanoPlot (used two devices) 0.0-7 o split up again into separate nlcv and a4 packages 0.0-6 o updated vignettes 0.0-5 o merged nlcv 0.1-72 into the a4 package 0.0-4 o added limmaTwoGroups function o removed dependency on nlcv (to avoid circular dependencies) 0.0-3 o insert (basic) vignette on comparison of two groups o fix new page (grid) for volcanoPlot o improved y-axis annotation for volcanoPlot o add probe2gene argument to spectralMap for alternative labeling of points (needs mpm >= 1.0-10) o added name space to hide probe2gene function o explicited makeLognormal argument for spectralMap o changed selection of points to label in volcanoPlot (union of topPvalues and topLogRatios) 0.0-2 o spectralMap added 0.0-1 o volcanoPlot added