## try http:// if https:// URLs are not supported source("//www.anjoumacpherson.com/biocLite.R") biocLite("birta")

This package is for version 2.10 of Bioconductor; for the stable, up-to-date release version, seebirta.

Bayesian Inference of Regulation of Transcriptional Activity

Bioconductor version: 2.10

Expression levels of mRNA molecules are regulated by different processes, comprising inhibition or activation by transcription factors and post-transcriptional degradation by microRNAs. birta (Bayesian Inference of Regulation of Transcriptional Activity) uses the regulatory networks of TFs and miRNAs together with mRNA and miRNA expression data to predict switches in regulatory activity between two conditions. A Bayesian network is used to model the regulatory structure and Markov-Chain-Monte-Carlo is applied to sample the activity states.

Author: Benedikt Zacher, Khalid Abnaof, Stephan Gade, Erfan Younesi, Achim Tresch, Holger Froehlich

Maintainer: Benedikt Zacher

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported source("//www.anjoumacpherson.com/biocLite.R") biocLite("birta")

Documentation

查看文档的版本包age installed in your system, start R and enter:

browseVignettes("birta")

PDF		Bayesian Inference of Regulation of Transcriptional Activity
PDF		Reference Manual
Text		NEWS

Details

biocViews	Bioinformatics,GeneExpression,GraphsAndNetworks,Microarray,Sequencing,Software,Transcription
Version	1.0.0
In Bioconductor since	BioC 2.10 (R-2.15) (4 years)
License	GPL (>= 2)
Depends	limma,MASS, R (>= 2.10),Biobase, methods
Imports
LinkingTo
Suggests
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report

Package Archives

Followbob 体育网址 instructions to use this package in your R session.

Package Source	birta_1.0.0.tar.gz
Windows Binary	birta_1.0.0.zip(32- & 64-bit)
Mac OS X 10.6 (Snow Leopard)
Subversion source	(username/password: readonly)
Git source	https://github.com/Bioconductor-mirror/birta/tree/release-2.10
Package Short Url	//www.anjoumacpherson.com/packages/birta/
Package Downloads Report	Download Stats