## try http:// if https:// URLs are not supported source("//www.anjoumacpherson.com/biocLite.R") biocLite("IRanges")

This package is for version 2.10 of Bioconductor; for the stable, up-to-date release version, seeIRanges.

Infrastructure for manipulating intervals on sequences

Bioconductor version: 2.10

The package provides efficient low-level and highly reusable S4 classes for storing ranges of integers, RLE vectors (Run-Length Encoding), and, more generally, data that can be organized sequentially (formally defined as Vector objects), as well as views on these Vector objects. Efficient list-like classes are also provided for storing big collections of instances of the basic classes. All classes in the package use consistent naming and share the same rich and consistent "Vector API" as much as possible.

Author: H. Pages, P. Aboyoun and M. Lawrence

Maintainer: Bioconductor Package Maintainer

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported source("//www.anjoumacpherson.com/biocLite.R") biocLite("IRanges")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("IRanges")

PDF		An Introduction to IRanges
PDF		Rle Tips and Tricks
PDF		Reference Manual
Text		NEWS

Details

biocViews	DataRepresentation,Infrastructure,Software
Version	1.14.4
In Bioconductor since	BioC 2.3 (R-2.8) (7.5 years)
License	Artistic-2.0
Depends	R(> = 2.8.0)、方法、效用,统计数据,BiocGenerics(>= 0.1.4)
Imports	methods, utils, stats,BiocGenerics, stats4
LinkingTo
Suggests	RUnit
SystemRequirements
Enhances
URL
Depends On Me	BayesPeak,Biostrings,BSgenome,ChIPpeakAnno,chipseq,cn.mops,CSAR,DECIPHER,deepSNV,easyRNASeq,exomeCopy,GenomicFeatures,GenomicRanges,Genominator,genoset,GGtools,girafe,gwascat,harbChIP,htSeqTools,LiebermanAidenHiC2009,MinimumDistance,nucleR,oneChannelGUI,pd.ag,PICS,r3Cseq,rGADEM,rMAT,Rsamtools,segmentSeq,ShortRead,SNPlocs.Hsapiens.dbSNP.20090506,SNPlocs.Hsapiens.dbSNP.20100427,SNPlocs.Hsapiens.dbSNP.20101109,SNPlocs.Hsapiens.dbSNP.20110815,SNPlocs.Hsapiens.dbSNP.20111119,TEQC,xmapcore
Imports Me	AnnotationDbi,ArrayExpressHTS,BayesPeak,Biostrings,biovizBase,BitSeq,cgdv17,charm,ChIPpeakAnno,chipseq,ChIPseqR,ChIPsim,ChromHeatMap,cn.mops,DECIPHER,DiffBind,EDASeq,fastseg,flowQ,gcrma,GenomicFeatures,GenomicRanges,genoset,ggbio,girafe,Gviz,lumi,MEDIPS,methVisual,mosaics,motifRG,MotIV,MSnbase,NarrowPeaks,nucleR,oligoClasses,OTUbase,pd.081229.hg18.promoter.medip.hx1,pd.2006.07.18.hg18.refseq.promoter,pd.2006.07.18.mm8.refseq.promoter,pd.2006.10.31.rn34.refseq.promoter,pd.aragene.1.0.st,pd.aragene.1.1.st,pd.ath1.121501,pd.barley1,pd.bovgene.1.1.st,pd.bovine,pd.bsubtilis,pd.cangene.1.1.st,pd.canine,pd.canine.2,pd.celegans,pd.charm.hg18.example,pd.chicken,pd.citrus,pd.cotton,pd.cyrgene.1.1.st,pd.cytogenetics.array,pd.drosgenome1,pd.drosophila.2,pd.e.coli.2,pd.ecoli,pd.ecoli.asv2,pd.equgene.1.0.st,pd.equgene.1.1.st,pd.feinberg.hg18.me.hx1,pd.feinberg.mm8.me.hx1,pd.felgene.1.1.st,pd.genomewidesnp.5,pd.genomewidesnp.6,pd.hc.g110,pd.hg.focus,pd.hg.u133.plus.2,pd.hg.u133a,pd.hg.u133a.2,pd.hg.u133a.tag,pd.hg.u133b,pd.hg.u219,pd.hg.u95a,pd.hg.u95av2,pd.hg.u95b,pd.hg.u95c,pd.hg.u95d,pd.hg.u95e,pd.ht.hg.u133.plus.pm,pd.ht.hg.u133a,pd.ht.mg.430a,pd.hu6800,pd.huex.1.0.st.v2,pd.hugene.1.0.st.v1,pd.hugene.1.1.st.v1,pd.maize,pd.mapping250k.nsp,pd.mapping250k.sty,pd.mapping50k.hind240,pd.mapping50k.xba240,pd.medicago,pd.mg.u74a,pd.mg.u74av2,pd.mg.u74b,pd.mg.u74bv2,pd.mg.u74c,pd.mg.u74cv2,pd.mirna.1.0,pd.moe430a,pd.moe430b,pd.moex.1.0.st.v1,pd.mogene.1.0.st.v1,pd.mogene.1.1.st.v1,pd.mouse430.2,pd.mouse430a.2,pd.mu11ksuba,pd.mu11ksubb,pd.ovigene.1.0.st,pd.ovigene.1.1.st,pd.pae.g1a,pd.plasmodium.anopheles,pd.poplar,pd.porcine,pd.porgene.1.0.st,pd.porgene.1.1.st,pd.rae230a,pd.rae230b,pd.raex.1.0.st.v1,pd.ragene.1.0.st.v1,pd.ragene.1.1.st.v1,pd.rat230.2,pd.rg.u34a,pd.rg.u34b,pd.rg.u34c,pd.rhegene.1.1.st,pd.rhesus,pd.rice,pd.rn.u34,pd.s.aureus,pd.soybean,pd.soygene.1.1.st,pd.sugar.cane,pd.tomato,pd.u133.x3p,pd.vitis.vinifera,pd.wheat,pd.x.laevis.2,pd.x.tropicalis,pd.xenopus.laevis,pd.yeast.2,pd.yg.s98,pd.zebgene.1.1.st,pd.zebrafish,pdInfoBuilder,PICS,PING,R453Plus1Toolbox,REDseq,Repitools,rGADEM,rMAT,rnaSeqMap,Rolexa,Rsamtools,rtracklayer,segmentSeq,ShortRead,SNPchip,SNPlocs.Hsapiens.dbSNP.20090506,SNPlocs.Hsapiens.dbSNP.20100427,SNPlocs.Hsapiens.dbSNP.20101109,SNPlocs.Hsapiens.dbSNP.20110815,SNPlocs.Hsapiens.dbSNP.20111119,TSSi,VanillaICE,VariantAnnotation
Suggests Me	BiocGenerics,HilbertVis,HilbertVisGUI,Repitools,yeastRNASeq
Build Report

Package Archives

Followbob 体育网址 instructions to use this package in your R session.

Package Source	IRanges_1.14.4.tar.gz
Windows Binary	IRanges_1.14.4.zip(32- & 64-bit)
Mac OS X 10.6 (Snow Leopard)
Subversion source	(username/password: readonly)
Git source	https://github.com/Bioconductor-mirror/IRanges/tree/release-2.10
Package Short Url	//www.anjoumacpherson.com/packages/IRanges/
Package Downloads Report	Download Stats